Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00683 ATGGTGATCGGCCAACGCCACCGACCTGGACCGTTGCTTCATATCACTCCATTGACGATACCGGAGGAACCTGCGAACCAGACGCGGCTTCCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGACAATGCTAACGGCGGCGATTATTCTCCCTATCATTTGCAGGAAGTCCTTGCGGCATTTCAGCGATATCTGCCTTCGACGAGTGAGTCGGAGATTGAATCTAATTTGGAGTTGTCCGGCCGGGAATCGGATGTTCCGGTGGATGCTTACTCTTGCGATCAATTTAGAATATTTGAGTTCAAGGTGAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTTTGCTCATCCTGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCCGGTACGGCGTGCCCCGACTTTCGAAAAGGTAGCTGCAAAAAAGGCGAGTCGTGCGAGTTTGCGCATGGTGTATTTGAATGTTGGCTCCATCCTTCACGTTACAGGACTCAGCCGTGCAAGGACGGGATCAACTGTCGTAGGAGAGTTTGTTTCTTCGCCCATACTCCCGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAGACGCGAATTCGCCTGACTCATATGAGGAATCTCCTCTGCGGCAGTGTTTGGATGGAACCTGTGCGAAATCGCTTCCGTTTCTGTCTTCTCCGGTGTCTGTTTCGCCGTCGGCGACTCCAGTTGACTCTCCACCGATATCGCCGATGACTAGGTCGCTCGCCCGGTCTCTTGGCTCAAGTTCCGTCAATGAAATTGTCGCATCCCTCCACATGCATCTAAGCAAGGTGAATTCTCTACCATCTTCCTGGAATGTTCAAATTGGATCTCCCGGTTATCCGTCTCGAATCCGCCCTGGATTTTGTAGCCTTCCAACAACACCAACTCAGCCTCCAACAGGTCCAGGAGTTGGGTTGCTAGACTTCACGAACCGTGGATTTGTGGAGGAACCGGCAATGGAGCGAGTCGAATCGGGAAGGGAGCTGAGGGCAAAGATGCTGCAGAAACTGAGTGAGGAAAATTCTTTGGACTTGGCTGATTCAGGCCCTTCAGACTGCACACCGGACGTTGAATGGGTATCAGATCTGGTAAACTGA 1152 52.17 MVIGQRHRPGPLLHITPLTIPEEPANQTRLPFPLSGISVSSDDNANGGDYSPYHLQEVLAAFQRYLPSTSESEIESNLELSGRESDVPVDAYSCDQFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGESCEFAHGVFECWLHPSRYRTQPCKDGINCRRRVCFFAHTPEQLRVLPQQSPRDANSPDSYEESPLRQCLDGTCAKSLPFLSSPVSVSPSATPVDSPPISPMTRSLARSLGSSSVNEIVASLHMHLSKVNSLPSSWNVQIGSPGYPSRIRPGFCSLPTTPTQPPTGPGVGLLDFTNRGFVEEPAMERVESGRELRAKMLQKLSEENSLDLADSGPSDCTPDVEWVSDLVN 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3277711 3278862 - CmoCh11G006830.1 Cmo11g00683 391302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00683 383 MobiDBLite consensus disorder prediction 237 258 - -
Cmo11g00683 383 PANTHER UNKEMPT FAMILY MEMBER 41 383 IPR045234 -
Cmo11g00683 383 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 41 383 - -
Cmo11g00683 383 MobiDBLite consensus disorder prediction 199 216 - -
Cmo11g00683 383 Gene3D - 136 200 - -
Cmo11g00683 383 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 161 IPR000571 GO:0046872
Cmo11g00683 383 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872
Cmo11g00683 383 MobiDBLite consensus disorder prediction 199 218 - -
Cmo11g00683 383 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Cmo11g00683 383 SMART c3hfinal6 136 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00324 Cmo-Chr9:1409001 Cmo11g00683 Cmo-Chr11:3277711 1.37E-105 dispersed
Cmo10g00717 Cmo-Chr10:3287572 Cmo11g00683 Cmo-Chr11:3277711 0 dispersed
Cmo11g00683 Cmo-Chr11:3277711 Cmo12g01319 Cmo-Chr12:11538984 8.22E-153 dispersed
Cmo11g00683 Cmo-Chr11:3277711 Cmo12g00560 Cmo-Chr12:3468989 4.78E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10570 PF00642 zf-CCCH 4.40E-06 CL0537 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00683 - - csv:101204432 640.573