Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00683 | ATGGTGATCGGCCAACGCCACCGACCTGGACCGTTGCTTCATATCACTCCATTGACGATACCGGAGGAACCTGCGAACCAGACGCGGCTTCCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGACAATGCTAACGGCGGCGATTATTCTCCCTATCATTTGCAGGAAGTCCTTGCGGCATTTCAGCGATATCTGCCTTCGACGAGTGAGTCGGAGATTGAATCTAATTTGGAGTTGTCCGGCCGGGAATCGGATGTTCCGGTGGATGCTTACTCTTGCGATCAATTTAGAATATTTGAGTTCAAGGTGAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTTTGCTCATCCTGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCCGGTACGGCGTGCCCCGACTTTCGAAAAGGTAGCTGCAAAAAAGGCGAGTCGTGCGAGTTTGCGCATGGTGTATTTGAATGTTGGCTCCATCCTTCACGTTACAGGACTCAGCCGTGCAAGGACGGGATCAACTGTCGTAGGAGAGTTTGTTTCTTCGCCCATACTCCCGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAGACGCGAATTCGCCTGACTCATATGAGGAATCTCCTCTGCGGCAGTGTTTGGATGGAACCTGTGCGAAATCGCTTCCGTTTCTGTCTTCTCCGGTGTCTGTTTCGCCGTCGGCGACTCCAGTTGACTCTCCACCGATATCGCCGATGACTAGGTCGCTCGCCCGGTCTCTTGGCTCAAGTTCCGTCAATGAAATTGTCGCATCCCTCCACATGCATCTAAGCAAGGTGAATTCTCTACCATCTTCCTGGAATGTTCAAATTGGATCTCCCGGTTATCCGTCTCGAATCCGCCCTGGATTTTGTAGCCTTCCAACAACACCAACTCAGCCTCCAACAGGTCCAGGAGTTGGGTTGCTAGACTTCACGAACCGTGGATTTGTGGAGGAACCGGCAATGGAGCGAGTCGAATCGGGAAGGGAGCTGAGGGCAAAGATGCTGCAGAAACTGAGTGAGGAAAATTCTTTGGACTTGGCTGATTCAGGCCCTTCAGACTGCACACCGGACGTTGAATGGGTATCAGATCTGGTAAACTGA | 1152 | 52.17 | MVIGQRHRPGPLLHITPLTIPEEPANQTRLPFPLSGISVSSDDNANGGDYSPYHLQEVLAAFQRYLPSTSESEIESNLELSGRESDVPVDAYSCDQFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGESCEFAHGVFECWLHPSRYRTQPCKDGINCRRRVCFFAHTPEQLRVLPQQSPRDANSPDSYEESPLRQCLDGTCAKSLPFLSSPVSVSPSATPVDSPPISPMTRSLARSLGSSSVNEIVASLHMHLSKVNSLPSSWNVQIGSPGYPSRIRPGFCSLPTTPTQPPTGPGVGLLDFTNRGFVEEPAMERVESGRELRAKMLQKLSEENSLDLADSGPSDCTPDVEWVSDLVN | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3277711 | 3278862 | - | CmoCh11G006830.1 | Cmo11g00683 | 391302 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00683 | 383 | MobiDBLite | consensus disorder prediction | 237 | 258 | - | - | |
Cmo11g00683 | 383 | PANTHER | UNKEMPT FAMILY MEMBER | 41 | 383 | IPR045234 | - | |
Cmo11g00683 | 383 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 41 | 383 | - | - | |
Cmo11g00683 | 383 | MobiDBLite | consensus disorder prediction | 199 | 216 | - | - | |
Cmo11g00683 | 383 | Gene3D | - | 136 | 200 | - | - | |
Cmo11g00683 | 383 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 141 | 161 | IPR000571 | GO:0046872 | |
Cmo11g00683 | 383 | ProSiteProfiles | Zinc finger C3H1-type profile. | 137 | 163 | IPR000571 | GO:0046872 | |
Cmo11g00683 | 383 | MobiDBLite | consensus disorder prediction | 199 | 218 | - | - | |
Cmo11g00683 | 383 | SMART | c3hfinal6 | 171 | 194 | IPR000571 | GO:0046872 | |
Cmo11g00683 | 383 | SMART | c3hfinal6 | 136 | 162 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00324 | Cmo-Chr9:1409001 | Cmo11g00683 | Cmo-Chr11:3277711 | 1.37E-105 | dispersed | |
Cmo10g00717 | Cmo-Chr10:3287572 | Cmo11g00683 | Cmo-Chr11:3277711 | 0 | dispersed | |
Cmo11g00683 | Cmo-Chr11:3277711 | Cmo12g01319 | Cmo-Chr12:11538984 | 8.22E-153 | dispersed | |
Cmo11g00683 | Cmo-Chr11:3277711 | Cmo12g00560 | Cmo-Chr12:3468989 | 4.78E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10570 | PF00642 | zf-CCCH | 4.40E-06 | CL0537 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00683 | - | - | csv:101204432 | 640.573 |