Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00694 ATGAGGTTACCGTCCTCTGAAATTCTTGTCCTCTTGCTATACTTTCACCTTCTTCTCTGCTTCGCTACTTTCCCTTCCCTTTCCATCTCCATCTCCATCTTAACCGTCACTAAATCCGACTTGGTGTTCGGCGAGATCAATGCAACTTCCGATTCTAACTCCTCGAGATCCGCCAATGACGACCATAGTTTTGCTGATATAATCGATCAGGCTCTCGAGAGGGAATTCATTGAGAATGGGCAGAGTGATCAAGCCGCGGATGCTGGCAGCTTCAACAACAGCGTAGCTGATAAGCAGGCAGTTTTGGAGACTGTTGCCAGAGTTAAGTCAAAGAAGAACGAATCGAAAGAGGAGAAATCATTTCAGTTCCATGATGTCTTCAATTTAGATAATGAGAATCGAGCAGAAGACATGCCCACATTAATTGATCGGAAGGACAATGTCTTTATTATATCCAATCCCAAGTCGAAGTATCCAGTGCTCCAATTGGATTTAAGATTGATTTCGGATCTAGTCGTTGTTATTGTTTCTGCAACTTGTGGTGGCATTGCTTTTGCTTGTGCAGGACAACCGGTCTTTACTGGATACCTGTTGGCTGGATCTCTCATTGGACCCGGAGGTTTAAGCTTTGTCAGTGAAATGGTGCAAGTTGAGACAGTTGCTCAGTTTGGTGTGATCTTCCTTCTTTTTGCATTGGGCTTGGAGTTCTCCACTACAAAACTTCAGTATGTCTTACATTCTGATGGGAATTTATTCCAGCAGTATGCTGATCACCCTTTTTTCCATTGTATTTCTCTGCTGGATGACGAGTATGGTCACATTTTCAAGCACAAAATTCTGATTGCGATTCTTTCATCCAATGCTCTTCAGAATGGGATAATCTTTTATCATACTTCGTGGCCCAAGTTAAAAACATATCTTGATGGCTTAAGTAAGCTCAGTGCAGTTACACTTGAGCCTTTCTGCTATGTAGTTGTACATCTGCTGTGTGGTGGTAAATCATCAGAGGGGGTCTTTGTTGGGGCATTCTTGTCTATGTCTTCGACTGCAGTGGTCCTTAAGTTTTTAATGGAACGAAATAGCATCAATGCCCTTCATGGTCAGGTGACCATTGGTACTCTTATTCTTCAGGATTCAACTGTAGGATTGCTGTTTGCCCTGCTTCCGATTCTTGGTGGTACTTCTGGTGTTCTTCAAGGAATTCTGTCCATGACTAAGTCGTTGGTGGTCTTGATTACGTTTTTTATTTTTTTGTCAATATTATCTCGCACATGTGTGCCGTGGTTCCTTAAGCTTATGATTAGCCTGTCATCTCAGACTAATGAGCTTTATCAATTGGCAGCTGTTGCATTCTGCTTACTTGTAGCTTGGTGCAGTGATAAACTTGGTTTAAGCCTTGAATTGGGTTCCTTTGCTGCGGGTGTGATGATATCAACTACTGATCTTGCTCAGCACACACTCGAACAGGTGGAATTTTTTGAAGCATTTGAAAACTATAGTAAGCTTTCAGGTCTGAAATCATGCTACAAACATGTGTTGACATGGAAAAAGGTTGAGCCCATCCGCAACTTCTTTGCTGCACTTTTTCTTGCTAGCATTGGGATGCTTATTCATGTTCATTTCCTATGGAACCACATTGATATTTTACTTGCAGCTGTAATATTGGTCATCGTTATAAAAACTTTAGTGGTTGCTGCTGTTGTCAAGGGATTTGGATACAACAACAAGACTTCACTTCTGGTTGGGATGTCACTCGCACAAATTGGGGAATTTTCTTTTGTCCTTCTAAGTCGTGCATCTAATCTTCATCTTGTCGAGGTGACTACCCCATTGCTTTTCAAGCTTATTCCTGCTGTGGTACGTATTGGAGTGTTGTTCCGCTGGTTTTCACCTGATGGTTTGAGTGAGACGGGATTTAAAGGAGATGGCTTTCGAACAGATGGTATCAAGCGCATCACTTTGGTGGTTCAAGACTCTCACGTTTCATGA 1989 42.13 MRLPSSEILVLLLYFHLLLCFATFPSLSISISILTVTKSDLVFGEINATSDSNSSRSANDDHSFADIIDQALEREFIENGQSDQAADAGSFNNSVADKQAVLETVARVKSKKNESKEEKSFQFHDVFNLDNENRAEDMPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVFTGYLLAGSLIGPGGLSFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLQYVLHSDGNLFQQYADHPFFHCISLLDDEYGHIFKHKILIAILSSNALQNGIIFYHTSWPKLKTYLDGLSKLSAVTLEPFCYVVVHLLCGGKSSEGVFVGAFLSMSSTAVVLKFLMERNSINALHGQVTIGTLILQDSTVGLLFALLPILGGTSGVLQGILSMTKSLVVLITFFIFLSILSRTCVPWFLKLMISLSSQTNELYQLAAVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEFFEAFENYSKLSGLKSCYKHVLTWKKVEPIRNFFAALFLASIGMLIHVHFLWNHIDILLAAVILVIVIKTLVVAAVVKGFGYNNKTSLLVGMSLAQIGEFSFVLLSRASNLHLVEVTTPLLFKLIPAVVRIGVLFRWFSPDGLSETGFKGDGFRTDGIKRITLVVQDSHVS 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3352763 3364465 - CmoCh11G006940.1 Cmo11g00694 391313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00694 662 Pfam Sodium/hydrogen exchanger family 172 607 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo11g00694 662 PANTHER K(+) EFFLUX ANTIPORTER 6 514 661 - -
Cmo11g00694 662 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 18 244 IPR045158 GO:0015386|GO:0071805|GO:1902600
Cmo11g00694 662 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 514 661 IPR045158 GO:0015386|GO:0071805|GO:1902600
Cmo11g00694 662 Gene3D - 165 247 IPR038770 -
Cmo11g00694 662 Gene3D - 310 497 IPR038770 -
Cmo11g00694 662 Gene3D - 502 629 IPR038770 -
Cmo11g00694 662 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 324 493 IPR045158 GO:0015386|GO:0071805|GO:1902600
Cmo11g00694 662 PANTHER K(+) EFFLUX ANTIPORTER 6 324 493 - -
Cmo11g00694 662 PANTHER K(+) EFFLUX ANTIPORTER 6 18 244 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00694 Cmo12g00576 CCT
Cmo10g00738 Cmo11g00694 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00694 Cmo-Chr11:3352763 Cmo18g01218 Cmo-Chr18:12098474 8.17E-69 dispersed
Cmo10g00738 Cmo-Chr10:3378959 Cmo11g00694 Cmo-Chr11:3352763 3.39E-132 wgd
Cmo11g00694 Cmo-Chr11:3352763 Cmo12g00576 Cmo-Chr12:3555280 5.39E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00694 - - mesc:110612261 768.074