Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00724 ATGGAGAATCATCAGGAGGTTGAAAGCGAGGAAGAAGATGGAGTGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAATTGGAGTCGTGGGTTCGAGCTTGACTTTGGAGAAGGTCGCTGCGGCTAAACAGTATATTGAGAATCATTACAAGGCTCAAAAGAAACATATTCAAGAACGCAAAGAGAGGCGTTCCTTGCTAGAAAGGAGGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCACAAGGAGACTCAATACATTCGTCTCAAAAGGAATAAGATTTGTGTTGAGGATTTTGACCTTTTGACAATTATTGGGCGAGGTGCTTTTGGGGAGGTTAGACTTTGTCGGGAGAAGAAAACAGGCAACATATATGCTATGAAGAAGCTGAAGAAATCAGAAATGCTCAGTAGAGGACAGGTTGAACATGTCAGAGCTGAAAGAAATTTGCTTGCAGAAGTTGCAAGTCACTACATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATACTTGTATCTAATCATGGAGTATCTTCCTGGAGGTGACATGATGACTTTACTGATAAGGGAAGAAACTTTGACAGAAATCGTAGCCAGATTTTACATCGCTCAAAGCGTTCTAGCTATCGAGTCGATTCATACACATAACTACATTCACAGAGACATAAAACCGGACAACCTTCTTTTGGACCAAAGGGGTCATATGAAACTGTCTGATTTTGGTCTTTGCAAACCTCTTGACTGTTCAAATCTATCTTCTATAAATGAAAATGAAGTCCTTGACGACGATAACTTGCACGACACGGTGGATGTCGATGCAAGCGTTCCGGGGAAGAAAAGTGGGAGGCGTTGGAAGAGCCCCCTTGAACAACTTCAACATTGGCAGATTAACAGAAGGAAACTGGCATTCTCCACGGTTGGCACTCCAGATTATATAGCTCCAGAAGTGTTGCTTAAAAAAGGATACGGTGTTGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCCGATGAGATAAGGTTATCACCTGAAGCAAAGGACCTGATTAGTAGGCTGCTTTGTGATGCAGACCATCGGCTTGGGACCGGAGATGTCGACCAAATAAAGGTCAGTATCATAACTCATCCTTGGTTCAAAGATATCGAGTGGGACAAACTCTATGATATAGATGCAGCATTTAAGCCTGAGGTCAATGGGGAACTTGATACGCAGAACTTCATGCAATTTGATGAGGTCGATCCACCGCCAACGAGAACGGGATCTGGACCAATAAGGAAGATGTTCTTGACTCCTAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGATGCTGTCAAAGGGCTACGCCATTCATTTGGTAAGAGATTTCTTTCTTTCCCTATCTCATTCTTCGGTTCCCGCCCCGTCCCCTCGTATAGGACGTGTAACGATTTGAACTCAACCACCAGCCCGATTCGGACTTCGTCAGTTGACTCAACACAAAGTGACTCGGCACTGAACTACTCAACGACGTACTCAACGGGTGATAGGGAAGCCATACTGGGATCATCTGGGGATGCATTGTCACAGTAA 1704 43.08 MENHQEVESEEEDGVAEEEEEEEEEEEIGVVGSSLTLEKVAAAKQYIENHYKAQKKHIQERKERRSLLERRLASSDVSEEEQINLLKDLEHKETQYIRLKRNKICVEDFDLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHYIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTEIVARFYIAQSVLAIESIHTHNYIHRDIKPDNLLLDQRGHMKLSDFGLCKPLDCSNLSSINENEVLDDDNLHDTVDVDASVPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDLISRLLCDADHRLGTGDVDQIKVSIITHPWFKDIEWDKLYDIDAAFKPEVNGELDTQNFMQFDEVDPPPTRTGSGPIRKMFLTPKDLSFVGYTYKNFDAVKGLRHSFGKRFLSFPISFFGSRPVPSYRTCNDLNSTTSPIRTSSVDSTQSDSALNYSTTYSTGDREAILGSSGDALSQ 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3495011 3501301 + CmoCh11G007240.1 Cmo11g00724 391343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00724 567 SUPERFAMILY Protein kinase-like (PK-like) 106 462 IPR011009 -
Cmo11g00724 567 Gene3D Phosphorylase Kinase; domain 1 439 449 - -
Cmo11g00724 567 Gene3D Transferase(Phosphotransferase) domain 1 193 258 - -
Cmo11g00724 567 ProSiteProfiles AGC-kinase C-terminal domain profile. 421 493 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo11g00724 567 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Cmo11g00724 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Cmo11g00724 567 Gene3D Transferase(Phosphotransferase) domain 1 312 438 - -
Cmo11g00724 567 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 503 - -
Cmo11g00724 567 SMART serkin_6 109 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00724 567 MobiDBLite consensus disorder prediction 527 546 - -
Cmo11g00724 567 Gene3D Phosphorylase Kinase; domain 1 107 192 - -
Cmo11g00724 567 Pfam Protein kinase domain 111 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00724 567 Pfam Protein kinase domain 309 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00724 567 MobiDBLite consensus disorder prediction 1 33 - -
Cmo11g00724 567 ProSiteProfiles Protein kinase domain profile. 109 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00724 567 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 26 503 - -
Cmo11g00724 567 CDD STKc_NDR_like 107 484 - -
Cmo11g00724 567 Coils Coil 1 27 - -
Cmo11g00724 567 SMART pkinase_C_6 421 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo11g00724 567 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00764 Cmo11g00724 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01793 Cmo-Chr1:13215370 Cmo11g00724 Cmo-Chr11:3495011 0 dispersed
Cmo11g00724 Cmo-Chr11:3495011 Cmo17g00156 Cmo-Chr17:904544 0 dispersed
Cmo10g00764 Cmo-Chr10:3533326 Cmo11g00724 Cmo-Chr11:3495011 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74665 PF00069 Pkinase 4.90E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00724 K08790 - csv:101208238 910.598