Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00726 | ATGAGGAAGGGAGGCTTAAGCAACAATCTCGACCTCAAACTCAGTCTCCCTCAAGAAGACCAATCCATAGCCAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTTGTAAACAGAGATGGAGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACACAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTGAGATGAAAATTGAGGAGTCTTACCGCAGGCAGATTGCTAAAGAACTGAAAATCAATCAATCAGCACAGTGTCCCTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGGTCAATATATATCATTTTAGAGTACATGGATGGTGGATCTTTAGCTGATTTTCTGAAAAAGGTTAAAAAAATTGAAGAACCATATCTTGCTGCCATTTCTAAGCAGGTGCTGAAGGGGCTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTGAAGCCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACCGACTTCGGTGTGAGTGCGATTATGGCAAGCACAACTGGAGAGGCTAATACTTTCGTTGGCACATATAACTATATGTCTCCAGAGAGAATTGTTGGAAATAGATATGGCAAAAAAAGTGACATTTGGAGCTTGGGGCTGATATTACTTGAATGTGCAACCGGCAAATTCCCTTATTCTCCACCCGAGAAAGATGGAGGATGGGGTAACTTTTATGATCTTATGGTAGCCATTGCTGAGGGCGAACCTCCTTCTGCTCCAGCCGACCAGTTTACTCCCAACTTCTGTTCCTTCATTTCTGCATGTTTGCAAACGGAGCCGAAGGATAGACTGTCAGCACGTGAACTTTTGGAACACCCTTTCGTCAACATGTATGAAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGGACTCCACTTGCAACGTTCTAA | 1068 | 42.04 | MRKGGLSNNLDLKLSLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDTIKVIGKGNGGTVQLVQHKWTAQFFALKVIEMKIEESYRRQIAKELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIEEPYLAAISKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTTGEANTFVGTYNYMSPERIVGNRYGKKSDIWSLGLILLECATGKFPYSPPEKDGGWGNFYDLMVAIAEGEPPSAPADQFTPNFCSFISACLQTEPKDRLSARELLEHPFVNMYEDTDIDLSSYFNDAGTPLATF | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3514026 | 3518292 | - | CmoCh11G007260.1 | Cmo11g00726 | 391345 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00726 | 355 | CDD | PKc_MAPKK_plant_like | 69 | 335 | - | - | |
Cmo11g00726 | 355 | SMART | serkin_6 | 71 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g00726 | 355 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 2 | 354 | - | - | |
Cmo11g00726 | 355 | ProSitePatterns | Protein kinases ATP-binding region signature. | 77 | 100 | IPR017441 | GO:0005524 | |
Cmo11g00726 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 146 | 159 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g00726 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 183 | 201 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g00726 | 355 | PRINTS | Tyrosine kinase catalytic domain signature | 249 | 271 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g00726 | 355 | ProSiteProfiles | Protein kinase domain profile. | 71 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g00726 | 355 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 150 | - | - | |
Cmo11g00726 | 355 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 189 | 201 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo11g00726 | 355 | Gene3D | Transferase(Phosphotransferase) domain 1 | 151 | 351 | - | - | |
Cmo11g00726 | 355 | SUPERFAMILY | Protein kinase-like (PK-like) | 56 | 336 | IPR011009 | - | |
Cmo11g00726 | 355 | Pfam | Protein kinase domain | 73 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g00726 | 355 | PANTHER | MAP KINASE KINASE | 2 | 354 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00767 | Cmo11g00726 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00026 | Cmo-Chr1:97615 | Cmo11g00726 | Cmo-Chr11:3514026 | 7.45E-69 | dispersed | |
Cmo11g00726 | Cmo-Chr11:3514026 | Cmo13g01011 | Cmo-Chr13:8596536 | 8.23E-72 | dispersed | |
Cmo05g01376 | Cmo-Chr5:10666100 | Cmo11g00726 | Cmo-Chr11:3514026 | 2.12E-156 | transposed | |
Cmo14g00685 | Cmo-Chr14:3500450 | Cmo11g00726 | Cmo-Chr11:3514026 | 6.78E-75 | transposed | |
Cmo12g01310 | Cmo-Chr12:11475316 | Cmo11g00726 | Cmo-Chr11:3514026 | 2.24E-135 | transposed | |
Cmo10g00767 | Cmo-Chr10:3558589 | Cmo11g00726 | Cmo-Chr11:3514026 | 0 | wgd | |
Cmo11g00726 | Cmo-Chr11:3514026 | Cmo12g01353 | Cmo-Chr12:11669407 | 3.63E-177 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74666 | PF00069 | Pkinase | 4.20E-71 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00726 | K20603 | - | csv:101204545 | 652.129 |