Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00726 ATGAGGAAGGGAGGCTTAAGCAACAATCTCGACCTCAAACTCAGTCTCCCTCAAGAAGACCAATCCATAGCCAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTTGTAAACAGAGATGGAGTTCGGATTGTTTCTCAGAGCGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACACAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTGAGATGAAAATTGAGGAGTCTTACCGCAGGCAGATTGCTAAAGAACTGAAAATCAATCAATCAGCACAGTGTCCCTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGGTCAATATATATCATTTTAGAGTACATGGATGGTGGATCTTTAGCTGATTTTCTGAAAAAGGTTAAAAAAATTGAAGAACCATATCTTGCTGCCATTTCTAAGCAGGTGCTGAAGGGGCTGATGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTGAAGCCTTCTAATTTATTAGTAAATCATAGAGGGGAAGTCAAGATTACCGACTTCGGTGTGAGTGCGATTATGGCAAGCACAACTGGAGAGGCTAATACTTTCGTTGGCACATATAACTATATGTCTCCAGAGAGAATTGTTGGAAATAGATATGGCAAAAAAAGTGACATTTGGAGCTTGGGGCTGATATTACTTGAATGTGCAACCGGCAAATTCCCTTATTCTCCACCCGAGAAAGATGGAGGATGGGGTAACTTTTATGATCTTATGGTAGCCATTGCTGAGGGCGAACCTCCTTCTGCTCCAGCCGACCAGTTTACTCCCAACTTCTGTTCCTTCATTTCTGCATGTTTGCAAACGGAGCCGAAGGATAGACTGTCAGCACGTGAACTTTTGGAACACCCTTTCGTCAACATGTATGAAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGGACTCCACTTGCAACGTTCTAA 1068 42.04 MRKGGLSNNLDLKLSLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDTIKVIGKGNGGTVQLVQHKWTAQFFALKVIEMKIEESYRRQIAKELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIEEPYLAAISKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTTGEANTFVGTYNYMSPERIVGNRYGKKSDIWSLGLILLECATGKFPYSPPEKDGGWGNFYDLMVAIAEGEPPSAPADQFTPNFCSFISACLQTEPKDRLSARELLEHPFVNMYEDTDIDLSSYFNDAGTPLATF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3514026 3518292 - CmoCh11G007260.1 Cmo11g00726 391345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00726 355 CDD PKc_MAPKK_plant_like 69 335 - -
Cmo11g00726 355 SMART serkin_6 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00726 355 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 354 - -
Cmo11g00726 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cmo11g00726 355 PRINTS Tyrosine kinase catalytic domain signature 146 159 IPR001245 GO:0004672|GO:0006468
Cmo11g00726 355 PRINTS Tyrosine kinase catalytic domain signature 183 201 IPR001245 GO:0004672|GO:0006468
Cmo11g00726 355 PRINTS Tyrosine kinase catalytic domain signature 249 271 IPR001245 GO:0004672|GO:0006468
Cmo11g00726 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00726 355 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Cmo11g00726 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cmo11g00726 355 Gene3D Transferase(Phosphotransferase) domain 1 151 351 - -
Cmo11g00726 355 SUPERFAMILY Protein kinase-like (PK-like) 56 336 IPR011009 -
Cmo11g00726 355 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00726 355 PANTHER MAP KINASE KINASE 2 354 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00767 Cmo11g00726 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00026 Cmo-Chr1:97615 Cmo11g00726 Cmo-Chr11:3514026 7.45E-69 dispersed
Cmo11g00726 Cmo-Chr11:3514026 Cmo13g01011 Cmo-Chr13:8596536 8.23E-72 dispersed
Cmo05g01376 Cmo-Chr5:10666100 Cmo11g00726 Cmo-Chr11:3514026 2.12E-156 transposed
Cmo14g00685 Cmo-Chr14:3500450 Cmo11g00726 Cmo-Chr11:3514026 6.78E-75 transposed
Cmo12g01310 Cmo-Chr12:11475316 Cmo11g00726 Cmo-Chr11:3514026 2.24E-135 transposed
Cmo10g00767 Cmo-Chr10:3558589 Cmo11g00726 Cmo-Chr11:3514026 0 wgd
Cmo11g00726 Cmo-Chr11:3514026 Cmo12g01353 Cmo-Chr12:11669407 3.63E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74666 PF00069 Pkinase 4.20E-71 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00726 K20603 - csv:101204545 652.129