Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00734 ATGGCGGATAAGGAAGAAGCAAAACAAGTTGTTCTACAGATTTTGGATTATGAAGATGGAGGAGTTGGTGCGAGTAAAGATCTCAGTAAAATCTCTGTTGCTAAATTTCCTGATTTTGAGCTAAAAGAAACTCGGAGTTTTAGGTGCACAATTCCGAAATCTGTGGTTGGGAGCTCTTCTTCACACGAGATTGCTAGAATGAATCCCTATAAACCTCCCAAAATTCCGGCCGAATCGGCAGTTCGGCGACCATCGTTTGCTCGTTCTTCGTTTTCAAAGCCGAAATCAAGGCTAGTTGAGCCACCTTGTCCTCATGGTGTGAATTTGGAAGAAGAAACGTTTGCAGAAAAATCAATATCTGGTTCACCATTCTGTAGCTCTACGAAGATGGACTCCCCAGCTAGAATAACTGCTGTGACTAGTCCTAGAGAAGCTTTGAAATCGGTCCCAACAACTCCTAGAACACCATTTACTGGAAATGAGGAGGAAGATGATGAAGAAGTTTACAGAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTGACAAAAACCATTTTAATCGAATGGTTTTCATTTTTGTGCTTGACGGGGTGTTTGATTGCTACCTTAACAGTAGACAAATTGGCGACAAAAGAGATCTGGGAATTAAGGTTGTGGAAATGGTGTGTTCTGGTATTAGTTATTTTCAGTGGTCGATTATTTTCGCGGTGGTTTATCAATTGTCTAGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTATATTTTGTCTACGGGCTGAGGAAGAGTGTTATAGTTTTTATTTGGCTGACTTTGGTTCTTCTAGCATGGGGTCTATTATTTGATCGAACCAGCAAGAGATCTAAGAAAGGCCATGCGATTCTGAGTTATGTTACTCGAGCTCTTGGTGGTTCTCTCATTGGAGCAGCAATATGGCTGGTGAAAACTTTGCTGGTGAAGATCCTAGCTGCTTCTTTTCAATGCACTAGATTCTTCGATCGGATTCAAGAATCGATCTTCCATCAGTATATACTGCGCACCCTATCAGGACCTCCACTGATGGAGATGGCTAAGGGAATTGGGAGAACAGCAGGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGTAAGGGACGGTGGGAAGGAAAGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAGAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCCATGTTATAAGAAGTTCAGGGCTATCCACCATATCTAATACAATAGAGAATTTTAGAGACGAAGAGCTTGAACAAAAAGATAAGGAGATTCACAGTGAATGGGAAGCAAGAGCTGCAGCTTACCAAATTTTCAGGAATGTCGCAAAACCCGGTAGCAAGTACATTGATGAAGACGACCTCTTTCGTTTTATGAGTAAGGAGGAAGTTGATAATATGCTGCCATTGTTTGAAGGAGCAGTTGAGACTGGGAAGATCAAGCGAAAAACCCTGAAGAATTGGCTGGTCAATGTTTACGTCGAACGCAAGTCGCTAGCCCACTCGTTGAATGACACGAAGACTGCAATAGAGGAGCTAAACAAGCTTGCTTCTGCAACTGTAGCGATTGTTATTATCATTGAATGGCTACTTATGATGGGTTTGTTGACGACACAAGTACTCGTCTTCTTTTCATCACAGCTTCTGCTGGTGGTCTTCATGTTCGGTAACACTGCCAGAACGGTATTTGAAGGCATCATATTCGTATTTGTGATGCATCCATTTGATGTCGGGGATCGTTGCGTCGTAGATGGTGTGCAGTTGATCGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATGTGACAATGAGAAGATCTTCTATCCAAACTCTGTTCTTGCCACAAAACCCATCAGTAACTTCTACAGAAGCCCGGAAATGGGCGATTCCATCGAATTTTCGGTCGACTTTTCCACATCAATCGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACATAGAAAGCAAACCTCAGTTCTGGCGCCCGAACCACAGTATCCTCGTGAAGGAGATCGAGAATGTCAACAAGATGAAAATGGGATTACATGTTAATCACACCATAAACTTTCAAAACTACGGCGACAAGAGCAGTCGCAGGTCGGAACTAGTGTTGGAGCTGAAGAAAGCTTTCGAGGATCTCGGCATCAAGTATCATCTCCTAGCTCAAGAAGTTCAGCTCAACTATGTGAGTTCAGCAGCTCCTATGGTTCCACCTTCCCAGAGATGA 2304 42.06 MADKEEAKQVVLQILDYEDGGVGASKDLSKISVAKFPDFELKETRSFRCTIPKSVVGSSSSHEIARMNPYKPPKIPAESAVRRPSFARSSFSKPKSRLVEPPCPHGVNLEEETFAEKSISGSPFCSSTKMDSPARITAVTSPREALKSVPTTPRTPFTGNEEEDDEEVYRTAELKVKERSGKKLTKTILIEWFSFLCLTGCLIATLTVDKLATKEIWELRLWKWCVLVLVIFSGRLFSRWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLTLVLLAWGLLFDRTSKRSKKGHAILSYVTRALGGSLIGAAIWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLMEMAKGIGRTAGTGQLSFRHLKKVRDGGKERKEEVIDVDKLKKMKQEKISAWTMRGLIHVIRSSGLSTISNTIENFRDEELEQKDKEIHSEWEARAAAYQIFRNVAKPGSKYIDEDDLFRFMSKEEVDNMLPLFEGAVETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASATVAIVIIIEWLLMMGLLTTQVLVFFSSQLLLVVFMFGNTARTVFEGIIFVFVMHPFDVGDRCVVDGVQLIVEEMNILTTIFLRCDNEKIFYPNSVLATKPISNFYRSPEMGDSIEFSVDFSTSIESIGALKARIKSYIESKPQFWRPNHSILVKEIENVNKMKMGLHVNHTINFQNYGDKSSRRSELVLELKKAFEDLGIKYHLLAQEVQLNYVSSAAPMVPPSQR 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3563852 3566721 + CmoCh11G007340.1 Cmo11g00734 391353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00734 767 SUPERFAMILY Sm-like ribonucleoproteins 586 645 IPR010920 -
Cmo11g00734 767 Pfam Mechanosensitive ion channel 537 742 IPR006685 GO:0016020|GO:0055085
Cmo11g00734 767 Gene3D - 596 645 IPR023408 -
Cmo11g00734 767 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 758 - -
Cmo11g00734 767 MobiDBLite consensus disorder prediction 141 163 - -
Cmo11g00734 767 PIRSF Memb_At2g17000 24 766 IPR016688 -
Cmo11g00734 767 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 758 IPR016688 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00779 Cmo11g00734 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01806 Cmo-Chr1:13267027 Cmo11g00734 Cmo-Chr11:3563852 0 dispersed
Cmo11g00734 Cmo-Chr11:3563852 Cmo17g00074 Cmo-Chr17:385654 0 dispersed
Cmo10g00779 Cmo-Chr10:3619191 Cmo11g00734 Cmo-Chr11:3563852 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00734 K22048 - csv:101209209 1231.85