Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00734 ATGGCGGATAAGGAAGAAGCAAAACAAGTTGTTCTACAGATTTTGGATTATGAAGATGGAGGAGTTGGTGCGAGTAAAGATCTCAGTAAAATCTCTGTTGCTAAATTTCCTGATTTTGAGCTAAAAGAAACTCGGAGTTTTAGGTGCACAATTCCGAAATCTGTGGTTGGGAGCTCTTCTTCACACGAGATTGCTAGAATGAATCCCTATAAACCTCCCAAAATTCCGGCCGAATCGGCAGTTCGGCGACCATCGTTTGCTCGTTCTTCGTTTTCAAAGCCGAAATCAAGGCTAGTTGAGCCACCTTGTCCTCATGGTGTGAATTTGGAAGAAGAAACGTTTGCAGAAAAATCAATATCTGGTTCACCATTCTGTAGCTCTACGAAGATGGACTCCCCAGCTAGAATAACTGCTGTGACTAGTCCTAGAGAAGCTTTGAAATCGGTCCCAACAACTCCTAGAACACCATTTACTGGAAATGAGGAGGAAGATGATGAAGAAGTTTACAGAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAGTTGACAAAAACCATTTTAATCGAATGGTTTTCATTTTTGTGCTTGACGGGGTGTTTGATTGCTACCTTAACAGTAGACAAATTGGCGACAAAAGAGATCTGGGAATTAAGGTTGTGGAAATGGTGTGTTCTGGTATTAGTTATTTTCAGTGGTCGATTATTTTCGCGGTGGTTTATCAATTGTCTAGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTATATTTTGTCTACGGGCTGAGGAAGAGTGTTATAGTTTTTATTTGGCTGACTTTGGTTCTTCTAGCATGGGGTCTATTATTTGATCGAACCAGCAAGAGATCTAAGAAAGGCCATGCGATTCTGAGTTATGTTACTCGAGCTCTTGGTGGTTCTCTCATTGGAGCAGCAATATGGCTGGTGAAAACTTTGCTGGTGAAGATCCTAGCTGCTTCTTTTCAATGCACTAGATTCTTCGATCGGATTCAAGAATCGATCTTCCATCAGTATATACTGCGCACCCTATCAGGACCTCCACTGATGGAGATGGCTAAGGGAATTGGGAGAACAGCAGGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGTAAGGGACGGTGGGAAGGAAAGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAGAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCCATGTTATAAGAAGTTCAGGGCTATCCACCATATCTAATACAATAGAGAATTTTAGAGACGAAGAGCTTGAACAAAAAGATAAGGAGATTCACAGTGAATGGGAAGCAAGAGCTGCAGCTTACCAAATTTTCAGGAATGTCGCAAAACCCGGTAGCAAGTACATTGATGAAGACGACCTCTTTCGTTTTATGAGTAAGGAGGAAGTTGATAATATGCTGCCATTGTTTGAAGGAGCAGTTGAGACTGGGAAGATCAAGCGAAAAACCCTGAAGAATTGGCTGGTCAATGTTTACGTCGAACGCAAGTCGCTAGCCCACTCGTTGAATGACACGAAGACTGCAATAGAGGAGCTAAACAAGCTTGCTTCTGCAACTGTAGCGATTGTTATTATCATTGAATGGCTACTTATGATGGGTTTGTTGACGACACAAGTACTCGTCTTCTTTTCATCACAGCTTCTGCTGGTGGTCTTCATGTTCGGTAACACTGCCAGAACGGTATTTGAAGGCATCATATTCGTATTTGTGATGCATCCATTTGATGTCGGGGATCGTTGCGTCGTAGATGGTGTGCAGTTGATCGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATGTGACAATGAGAAGATCTTCTATCCAAACTCTGTTCTTGCCACAAAACCCATCAGTAACTTCTACAGAAGCCCGGAAATGGGCGATTCCATCGAATTTTCGGTCGACTTTTCCACATCAATCGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACATAGAAAGCAAACCTCAGTTCTGGCGCCCGAACCACAGTATCCTCGTGAAGGAGATCGAGAATGTCAACAAGATGAAAATGGGATTACATGTTAATCACACCATAAACTTTCAAAACTACGGCGACAAGAGCAGTCGCAGGTCGGAACTAGTGTTGGAGCTGAAGAAAGCTTTCGAGGATCTCGGCATCAAGTATCATCTCCTAGCTCAAGAAGTTCAGCTCAACTATGTGAGTTCAGCAGCTCCTATGGTTCCACCTTCCCAGAGATGA 2304 42.06 MADKEEAKQVVLQILDYEDGGVGASKDLSKISVAKFPDFELKETRSFRCTIPKSVVGSSSSHEIARMNPYKPPKIPAESAVRRPSFARSSFSKPKSRLVEPPCPHGVNLEEETFAEKSISGSPFCSSTKMDSPARITAVTSPREALKSVPTTPRTPFTGNEEEDDEEVYRTAELKVKERSGKKLTKTILIEWFSFLCLTGCLIATLTVDKLATKEIWELRLWKWCVLVLVIFSGRLFSRWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLTLVLLAWGLLFDRTSKRSKKGHAILSYVTRALGGSLIGAAIWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLMEMAKGIGRTAGTGQLSFRHLKKVRDGGKERKEEVIDVDKLKKMKQEKISAWTMRGLIHVIRSSGLSTISNTIENFRDEELEQKDKEIHSEWEARAAAYQIFRNVAKPGSKYIDEDDLFRFMSKEEVDNMLPLFEGAVETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASATVAIVIIIEWLLMMGLLTTQVLVFFSSQLLLVVFMFGNTARTVFEGIIFVFVMHPFDVGDRCVVDGVQLIVEEMNILTTIFLRCDNEKIFYPNSVLATKPISNFYRSPEMGDSIEFSVDFSTSIESIGALKARIKSYIESKPQFWRPNHSILVKEIENVNKMKMGLHVNHTINFQNYGDKSSRRSELVLELKKAFEDLGIKYHLLAQEVQLNYVSSAAPMVPPSQR 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3563852 3566721 + CmoCh11G007340.1 Cmo11g00734 391353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00734 767 SUPERFAMILY Sm-like ribonucleoproteins 586 645 IPR010920 -
Cmo11g00734 767 Pfam Mechanosensitive ion channel 537 742 IPR006685 GO:0016020|GO:0055085
Cmo11g00734 767 Gene3D - 596 645 IPR023408 -
Cmo11g00734 767 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 758 - -
Cmo11g00734 767 MobiDBLite consensus disorder prediction 141 163 - -
Cmo11g00734 767 PIRSF Memb_At2g17000 24 766 IPR016688 -
Cmo11g00734 767 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 758 IPR016688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00734 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101209209 1231.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00779 Cmo11g00734 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01806 Cmo-Chr1:13267027 Cmo11g00734 Cmo-Chr11:3563852 0 dispersed
Cmo11g00734 Cmo-Chr11:3563852 Cmo17g00074 Cmo-Chr17:385654 0 dispersed
Cmo10g00779 Cmo-Chr10:3619191 Cmo11g00734 Cmo-Chr11:3563852 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g105 . . . . Bpe01g00608 . . Bma11g00602 Cmo10g00779 Cmo11g00734 . . . . . Cpe04g01033 . . . . . . . . . . . . . . . . . . . Lsi06g00313 . . Cme02g00283 . Blo14g00566 . . . . . . . . . Cma10g00752 Cma11g00720 Car10g00675 . . . . . . . . . . . . . . . . . . Csa01g02964 Chy02g01258 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00881 . 149 501 Mechanosensitive Ion Channel Family AT4G00290 63.0 5.9e-133 471.9
Cmo16g00807 . 24 726 Mechanosensitive Ion Channel Family AT5G10490 56.4 9.3e-198 687.6
Cmo12g00153 . 61 686 Mechanosensitive Ion Channel Family AT5G10490 59.0 2.6e-192 669.5
Cmo05g00572 . 10 706 Mechanosensitive Ion Channel Family AT5G10490 55.2 1.4e-190 663.7
Cmo05g00572 . 10 686 Mechanosensitive Ion Channel Family AT1G58200 57.1 9.1e-201 697.6
Cmo12g00153 . 10 651 Mechanosensitive Ion Channel Family AT1G58200 55.5 2.1e-189 659.8
Cmo16g00807 . 6 695 Mechanosensitive Ion Channel Family AT1G58200 51.8 2.7e-176 616.3
Cmo20g00729 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 56.0 1.7e-263 906.4
Cmo20g00729 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 52.7 3.0e-246 849.0
Cmo20g00729 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 59.0 2.2e-284 975.7
Cmo20g00729 . 252 933 Mechanosensitive Ion Channel Family AT2G17000 61.0 3.8e-233 805.4
Cmo11g01757 . 270 793 Mechanosensitive Ion Channel Family AT2G17000 53.8 1.2e-141 501.5
Cmo01g01806 . 69 720 Mechanosensitive Ion Channel Family AT5G19520 50.4 1.4e-173 607.4
Cmo10g00779 CST 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.3 1.7e-200 696.8
Cmo01g01806 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.4 1.5e-188 657.1
Cmo11g00734 CST 59 752 Mechanosensitive Ion Channel Family AT5G12080 51.0 1.7e-184 643.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00734 Cmo_Chr11 FPKM 46.385963 56.537899 51.744186 58.281769 81.711861 88.010628 82.030411 27.220356 33.533848 34.002464