Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00738 | ATGTGTACCAGAAGTATGTTTCCCTTCACCTCAGCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCCGGCATTCCTATACCTCCTGATCTCCTCTTTAGTATTAAAAGAAGTACCTTGGACTCTCCTTTCACTTCTAAGCTTTTCCCCCACCATCCTCAACATGGGTGGAACTATTTGCAAATGAGTTTAGGGAGGAAGATAGACCCAGAACCAGGGAGGTGCAGAAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAGGCGTATCCAGATTCGAAGTACTGCGAGAGGCACATGCATAGAGGCAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACGACAGCAACAAATGATATTAACCGCCTTTCAAATCCAGCGTTTTCTTCCCTAACCAACAATTCATCCCTACTCTCCTATCGGCCCTTCCCCGCTCATCAAATATCTTCAACTTCTAATGGGAATGGCATATCACCCCAAGACACTAATACCCTCTTGCTTCTGGAATCTGGTTCTTACTCGGACAGAAACCCAGATTACAGAAGAAGTAGGGACACTTATGGGCTAAAAGAGAAAGTCGATGAGTATGCCTTCTTCTCGCAAGAACCATCTGAAACTGCTGCAAGAGCCGATTCTCTGCAACTGACACCACTAACAATGAGTTGTTCTTCTCTATATCCAAAACAGAACAACTGCTCTTCTTTGCAGAATGATCAGTCCTGCTATCAGCCTCATCAGAGCCTCACAGACCCTTTGAAGCAACAAAAGAGAGATGAATCACAGAAGACAGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAGAGAGGATCACGGCTTGATTTCGAAGATAAATCATCAAATACTGGCTCAGTTTCCACCATTCGGCCCTCAACTTCCATTCCCACCACTTCCAACGACTTCCCCATTTTCGGATTCAACAACCCATAA | 975 | 44.31 | MCTRSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSIKRSTLDSPFTSKLFPHHPQHGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINRLSNPAFSSLTNNSSLLSYRPFPAHQISSTSNGNGISPQDTNTLLLLESGSYSDRNPDYRRSRDTYGLKEKVDEYAFFSQEPSETAARADSLQLTPLTMSCSSLYPKQNNCSSLQNDQSCYQPHQSLTDPLKQQKRDESQKTVHRFFDEWPPKERGSRLDFEDKSSNTGSVSTIRPSTSIPTTSNDFPIFGFNNP | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3593611 | 3595105 | - | CmoCh11G007380.1 | Cmo11g00738 | 391357 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00738 | 324 | Pfam | QLQ | 8 | 41 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Cmo11g00738 | 324 | ProSiteProfiles | QLQ domain profile. | 8 | 43 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Cmo11g00738 | 324 | PANTHER | - | 5 | 300 | IPR031137 | GO:0005634|GO:0006351|GO:0032502 | |
Cmo11g00738 | 324 | ProSiteProfiles | WRC domain profile. | 75 | 119 | IPR014977 | - | |
Cmo11g00738 | 324 | SMART | QLQ_2 | 7 | 43 | IPR014978 | GO:0005524|GO:0005634|GO:0006355 | |
Cmo11g00738 | 324 | MobiDBLite | consensus disorder prediction | 282 | 324 | - | - | |
Cmo11g00738 | 324 | Pfam | WRC | 76 | 117 | IPR014977 | - | |
Cmo11g00738 | 324 | MobiDBLite | consensus disorder prediction | 292 | 324 | - | - | |
Cmo11g00738 | 324 | PANTHER | GROWTH-REGULATING FACTOR 6 | 5 | 300 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g01417 | Cmo11g00738 | CCT | |
Cmo05g01417 | Cmo11g00738 | ECH | |
Cmo10g00789 | Cmo11g00738 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01417 | Cmo-Chr5:10884190 | Cmo11g00738 | Cmo-Chr11:3593611 | 1.75E-114 | dispersed | |
Cmo11g00738 | Cmo-Chr11:3593611 | Cmo14g01265 | Cmo-Chr14:10619218 | 6.41E-66 | dispersed | |
Cmo01g00038 | Cmo-Chr1:125736 | Cmo11g00738 | Cmo-Chr11:3593611 | 1.28E-66 | wgd | |
Cmo10g00789 | Cmo-Chr10:3672292 | Cmo11g00738 | Cmo-Chr11:3593611 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10573 | PF08879 | WRC | 1.10E-20 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00738 | - | - | cmax:111467370 | 572.007 |