Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00738 ATGTGTACCAGAAGTATGTTTCCCTTCACCTCAGCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCCGGCATTCCTATACCTCCTGATCTCCTCTTTAGTATTAAAAGAAGTACCTTGGACTCTCCTTTCACTTCTAAGCTTTTCCCCCACCATCCTCAACATGGGTGGAACTATTTGCAAATGAGTTTAGGGAGGAAGATAGACCCAGAACCAGGGAGGTGCAGAAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAGGCGTATCCAGATTCGAAGTACTGCGAGAGGCACATGCATAGAGGCAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACGACAGCAACAAATGATATTAACCGCCTTTCAAATCCAGCGTTTTCTTCCCTAACCAACAATTCATCCCTACTCTCCTATCGGCCCTTCCCCGCTCATCAAATATCTTCAACTTCTAATGGGAATGGCATATCACCCCAAGACACTAATACCCTCTTGCTTCTGGAATCTGGTTCTTACTCGGACAGAAACCCAGATTACAGAAGAAGTAGGGACACTTATGGGCTAAAAGAGAAAGTCGATGAGTATGCCTTCTTCTCGCAAGAACCATCTGAAACTGCTGCAAGAGCCGATTCTCTGCAACTGACACCACTAACAATGAGTTGTTCTTCTCTATATCCAAAACAGAACAACTGCTCTTCTTTGCAGAATGATCAGTCCTGCTATCAGCCTCATCAGAGCCTCACAGACCCTTTGAAGCAACAAAAGAGAGATGAATCACAGAAGACAGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAGAGAGGATCACGGCTTGATTTCGAAGATAAATCATCAAATACTGGCTCAGTTTCCACCATTCGGCCCTCAACTTCCATTCCCACCACTTCCAACGACTTCCCCATTTTCGGATTCAACAACCCATAA 975 44.31 MCTRSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSIKRSTLDSPFTSKLFPHHPQHGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINRLSNPAFSSLTNNSSLLSYRPFPAHQISSTSNGNGISPQDTNTLLLLESGSYSDRNPDYRRSRDTYGLKEKVDEYAFFSQEPSETAARADSLQLTPLTMSCSSLYPKQNNCSSLQNDQSCYQPHQSLTDPLKQQKRDESQKTVHRFFDEWPPKERGSRLDFEDKSSNTGSVSTIRPSTSIPTTSNDFPIFGFNNP 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3593611 3595105 - CmoCh11G007380.1 Cmo11g00738 391357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00738 324 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo11g00738 324 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo11g00738 324 PANTHER - 5 300 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cmo11g00738 324 ProSiteProfiles WRC domain profile. 75 119 IPR014977 -
Cmo11g00738 324 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo11g00738 324 MobiDBLite consensus disorder prediction 282 324 - -
Cmo11g00738 324 Pfam WRC 76 117 IPR014977 -
Cmo11g00738 324 MobiDBLite consensus disorder prediction 292 324 - -
Cmo11g00738 324 PANTHER GROWTH-REGULATING FACTOR 6 5 300 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01417 Cmo11g00738 CCT
Cmo05g01417 Cmo11g00738 ECH
Cmo10g00789 Cmo11g00738 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01417 Cmo-Chr5:10884190 Cmo11g00738 Cmo-Chr11:3593611 1.75E-114 dispersed
Cmo11g00738 Cmo-Chr11:3593611 Cmo14g01265 Cmo-Chr14:10619218 6.41E-66 dispersed
Cmo01g00038 Cmo-Chr1:125736 Cmo11g00738 Cmo-Chr11:3593611 1.28E-66 wgd
Cmo10g00789 Cmo-Chr10:3672292 Cmo11g00738 Cmo-Chr11:3593611 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10573 PF08879 WRC 1.10E-20 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00738 - - cmax:111467370 572.007