Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00756 ATGGCCCTCTCCATTTCTTCCACTGCGCTCTCAACTCTCCCAATCAGCAGAGAATCATCCCACAGCCACCACAGAGCACTCAATTTCCCCGGAAAATTCCCAAAATACAATCTCCGGCGAGGTTCTACTCATCTGAACGCTGCAAAATCCGGCGTATCTAGCGTCTGTGAACCGCTCCCTCCAGATCGACCCCTCTGGTTCCCCGGCAGCACCCCCCCTGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTCGGGTTCGACCCACTTGGATTGGGATCCGACCCAGAGCTCCTAAAATGGTTCGCACAAGCGGAGCTAATGCACGCGAGATGGGCAATGCTCGCAGTGGCCGGAATTCTCCTCCCCGAATGGTTCGAGAGCTTAGGACTGATTCAAAATTTCTCCTGGTACGACGCCGGAACGCGAGAATACTTTGCAGACCCGACGACATTGCTGGTGGCTCAATTGGGTCTAATGGGGTGGGTAGAGGGGCGGCGGTGGGCGGACATGGTTAACCCAGGCAGCGTCGACGTGGACCTCAAACTACCTCACAAGAAAAAGCCAACACCGGACGTCGGCTACCCCGGCGGGTTCTGGTTCGACCCGATGATGTGGGGCAGGGGATCGCCGGAGCCGGTCATGGTGCTGCGGACTAAGGAGATCAAGAACGGGCGGCTGGCGATGCTGGCGTTTGTCGGACTGTGGTTTCAGGCTATTTATACAGGGCAGGGTCCGCTGGAGAATCTCGCCGCCCACGTTGCCGATCCCGGCCACTGCAACATCTTCTCGGTAACGACAGTACTTGCCATGAATCTTGGGCATTCAGCTCCGGTGGAATTTGAGCTCAGATTCAGAGATTGGTTACATCCGACACCCGACACAACTGTGTTGCTTTTGGTTGAAAGAGTTGAGAGAAGAATCAAAATGGGTACTGCATCAGAAATTGTGGCGAAATTGAATTTGAAACCTCATCCAGAAGGCGGTTTTTACTCTGAAACTTTCAGAGACAAGTCCGTTCATCTCTCCAAATCTCATCTCCCACCGGAGTACAAGGTTGATCGAGAGGTCAGCACGTGCATATACTTTTTGGTGCCGTCTGGATGCATTTCTGCTCTTCATCGGATTCCATGTGCAGAAACTTGGCATTTTTACTCGGGAGAACCTCTTACGATACTGGAGTTGAATGAAGAGGACGGTCGAGTCAAATTTACTTGTCTTGGGTCTGATTTCATTGGAAGCAATCATTTACTTCAGTATACAGTGCCTCCTAATGTCTGGTTTGGTTCTTTTCCAACCAAGGACTTCAATATTTCTGCAGATGGGACTGTGACTAAAGCTGCTCCAAGGGACTCTGAGAATCACTACTCACTTGTGGGCTGCAGCTGTGCACCTGCTTTCCAGTTTGAGGACTTCGAATTGGCTAAACGTTCTGACCTTGTTTCTCGTTTTCCCGATAGTTCTGTAGATGGTCCCCGCTGTACAGAAACAGAAACGAACCCATTGCAAAAGGAAAAACTTAGAAAAAGACCTGACCTTTCTCTTTTTGTGGGTTCAAGAGTAAAGAATATTGGTAACTGCAAAAACATAGAGAGAGAGATCTTACCTCTCTTTTTGTGGGTTCAGGAACAAATTCTGATCCTTTTCGAAAGGAAGGTAGCTTCTCAGATTTCTAAAACGATATCTGCACACGAAAATGGAAACACACAATCAGGTACTTCTTCATGGATGATGTTTGGACATTGGAGCTTTGGGGTTCGGGTTCTCAGAGGAGGAGCAACTGCAGCTGGTGCAATACCGCCTCCACAGACGAAAATTTTCTTGAGAAGGAGAGATAAAGTTCTTTTGCCAATAAGTGTAGTCTCATTAGCTTCCATACCCATATTTTTGCCTCTACTGAGTATGACATGCTTGAAACTCTCGCTCTCGTCAATTAACTCGTCCGAATATGGTTCATTTTTTGTTATGTCTGATTCGAAGCTTAATTGTCTGGTAGGAAATATGTTTGATGAACAATGCGTGCTGACTTCAAATGCCAAGGATGGGTCCATTTGCTTAAGATTATCATCTCCAAAGGTTCCGATCGCCAGCAACACACGAGGCCAGCTGAAAATCCGGGAGGCTGCTGCTGATGCGAGTGCATGA 2142 48.88 MALSISSTALSTLPISRESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSVTTVLAMNLGHSAPVEFELRFRDWLHPTPDTTVLLLVERVERRIKMGTASEIVAKLNLKPHPEGGFYSETFRDKSVHLSKSHLPPEYKVDREVSTCIYFLVPSGCISALHRIPCAETWHFYSGEPLTILELNEEDGRVKFTCLGSDFIGSNHLLQYTVPPNVWFGSFPTKDFNISADGTVTKAAPRDSENHYSLVGCSCAPAFQFEDFELAKRSDLVSRFPDSSVDGPRCTETETNPLQKEKLRKRPDLSLFVGSRVKNIGNCKNIEREILPLFLWVQEQILILFERKVASQISKTISAHENGNTQSGTSSWMMFGHWSFGVRVLRGGATAAGAIPPPQTKIFLRRRDKVLLPISVVSLASIPIFLPLLSMTCLKLSLSSINSSEYGSFFVMSDSKLNCLVGNMFDEQCVLTSNAKDGSICLRLSSPKVPIASNTRGQLKIREAAADASA 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3676214 3683238 - CmoCh11G007560.1 Cmo11g00756 391375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00756 713 Gene3D Jelly Rolls 298 489 IPR014710 -
Cmo11g00756 713 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
Cmo11g00756 713 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC 1 265 - -
Cmo11g00756 713 CDD cupin_YML079wp 312 485 IPR009327 -
Cmo11g00756 713 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
Cmo11g00756 713 SUPERFAMILY Chlorophyll a-b binding protein 62 265 - -
Cmo11g00756 713 Pfam Cupin superfamily (DUF985) 314 473 IPR009327 -
Cmo11g00756 713 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Cmo11g00756 713 SUPERFAMILY RmlC-like cupins 302 485 IPR011051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00375 Cmo-Chr3:4670633 Cmo11g00756 Cmo-Chr11:3676214 1.03E-14 dispersed
Cmo10g00213 Cmo-Chr10:948889 Cmo11g00756 Cmo-Chr11:3676214 7.51E-61 dispersed
Cmo11g00172 Cmo-Chr11:834931 Cmo11g00756 Cmo-Chr11:3676214 3.32E-55 dispersed
Cmo11g00756 Cmo-Chr11:3676214 Cmo18g00628 Cmo-Chr18:8027006 2.97E-78 dispersed
Cmo15g00609 Cmo-Chr15:2958942 Cmo11g00756 Cmo-Chr11:3676214 1.94E-37 dispersed
Cmo11g00756 Cmo-Chr11:3676214 Cmo04g01932 Cmo-Chr4:9872268 4.75E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00756 K08908 - csv:101211430 481.1