Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00777 ATGGAGGGGAGTTCCGGCGGAGGTGGAGTGAGTATTGGGGGAACGACGGCGGGCAGCGTGGCGGTGGGTGGAGTGACGGGTGGCGGCGGCGGAGGAGGTAACGACGTGGAGTTGATGTGCAAAACATTGCAGGTGGAGCACAAATTGTTCTACTTCGATCTGAAGGAGAATCCCAGAGGCCGATATCTGAAGATTTCAGAGAAGACGTCGGCTACAAGGTCAACGATCATTGTTCCCTTCTCTGGGATTCCATGGTTCTTAGATCTCTTCAATTACTATATCAATTCTGATGATCCGGAGGTTTTTAGCAAGGAATTGCAGCTCGACACCAAGGTGTTCTACTTTGACATTGGTGAAAATCGTAGGGGTCGATTCTTGAAGGTATCTGAAGCTTCTGTCAGTAGAAACCGCAGCACCATTATCGTTCCTGCTGGAAGCAATCGGGACGAGGGATGGACTGCGTTCAGAAACATTTTGGCAGAGATCAATGAAGCGTCTAGGCTTTTCATACTGCCCAATCAGGAAAATTCCGAACATTCAGAACGTCTAGTCGGACTTTCGGATGATGTAGGTGCTGGCTTCATATCAGGTCATAGTAGTCAACCTGGTCCAACCTCTGACTTGAATGTAGACAGACAAGTAGACTTATCAGCTCAAGATGAAATGGGCAATCTGGGGGTATCAAAAGTTATCCGAGCTGATCAGAAGCGATTCTTTTTCGATCTTGGAAGTAACAACCGGGGTCATTTTTTGAGGATATCTGAGGTTGCAGGGGCAGATCGTTCTTCGATCATTCTCCCATTGTCGGGGCTAAAGCAGTTCTATGAAATAGTTGGACATTTCGTGGAGATCACCAAAGATAGGATTGAAGGAATGACGGGCGTGAATGTTAGGACGGTGGATCCGCCTCATAGATGA 918 47.82 MEGSSGGGGVSIGGTTAGSVAVGGVTGGGGGGGNDVELMCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGIPWFLDLFNYYINSDDPEVFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSNRDEGWTAFRNILAEINEASRLFILPNQENSEHSERLVGLSDDVGAGFISGHSSQPGPTSDLNVDRQVDLSAQDEMGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGADRSSIILPLSGLKQFYEIVGHFVEITKDRIEGMTGVNVRTVDPPHR 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3801726 3806317 - CmoCh11G007770.1 Cmo11g00777 391396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00777 305 PANTHER PUR-TRANSCRIPTIONAL ACTIVATOR 21 292 IPR006628 GO:0000977|GO:0032422
Cmo11g00777 305 SMART pur 37 98 IPR006628 GO:0000977|GO:0032422
Cmo11g00777 305 SMART pur 100 167 IPR006628 GO:0000977|GO:0032422
Cmo11g00777 305 SMART pur 225 286 IPR006628 GO:0000977|GO:0032422
Cmo11g00777 305 Pfam PurA ssDNA and RNA-binding protein 219 281 IPR006628 GO:0000977|GO:0032422
Cmo11g00777 305 Pfam PurA ssDNA and RNA-binding protein 38 164 IPR006628 GO:0000977|GO:0032422
Cmo11g00777 305 PANTHER PURINE-RICH BINDING PROTEIN-ALPHA, ISOFORM B 21 292 - -
Cmo11g00777 305 Gene3D - 98 167 - -
Cmo11g00777 305 Gene3D - 215 289 - -
Cmo11g00777 305 Gene3D - 26 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00777 K21772 PURA; transcriptional activator protein Pur-alpha - csv:101217040 546.969
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00829 Cmo11g00777 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00829 Cmo-Chr10:3898070 Cmo11g00777 Cmo-Chr11:3801726 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g5 . Blo03g01398 . . . . Bma14g00742 Bma07g01371 Cmo10g00829 Cmo11g00777 Cma10g00802 . . . . . Cpe18g00278 Bhi02g01439 Tan09g0742 . . . . . . . . . . . . . Cone5ag1410 . . Lsi06g00378 . . . . . Bda07g00772 Bda09g00340 . Bpe11g00947 Bma07g00328 . . . . Cma11g00768 . . . . Cpe04g00992 . . . . . . . Cla03g01411 Cam03g1491 Cec03g1529 Cco03g1523 Clacu03g1514 Cmu03g2071 Cre03g1743 . Csa01g03033 Chy02g01313 Cme02g00345
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003968 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00777 Cmo_Chr11 FPKM 0.155689 0.163004 0.215421 0.309616 0.459938 0.356242 0.289473 1.724389 1.337807 1.633889