Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00778 ATGGCAGATCAAGGCTTGGAAGGAGCCCAACCCGTCGATCTTAAAAAGCACCCTTCTGGGATTGTTCCTACCCTTCAGAACATTGTGTCAACAGTGAATCTGGACTGCAAGTTGGATCTTAAGGCCATTGCTCTGCAAGCCCGCAATGCCGAATACAATCCCAAGGCAAGTGGTCGTTTTGCTGCTGTTATTATGAGAATAAGGGAGCCAAAAACCACCGCATTGATATTTGCATCTGGGAAGATGGTCTGTACTGGAGCTAAGAGTGAACAGCAGTCAAAATTAGCAGCAAGAAAGGATTTTAAGATTCAGAATATTGTTGGTTCATGCGATGTTAAGTTCCCCATAAGACTTGAGGGTCTTGCATATTCTCACGGTGCCTTTTCAAGTGTAAGCTCTAGGATGAAACAACCAAAGATTGTGCTTCTCATTTTCGTTTCTGGAAAAATAGTTCTCACTGGGGCTAAGGTGAGAGAGGAGACATACACAGCATTTGAGAACATATATCCAGTGCTTACAGAGTTTAGGAAAAACCAGCAATGA 543 43.28 MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASGRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSVSSRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRKNQQ 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3811378 3825571 + CmoCh11G007780.1 Cmo11g00778 391397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00778 180 Gene3D - 101 179 IPR012295 -
Cmo11g00778 180 Gene3D - 12 100 IPR012295 -
Cmo11g00778 180 PANTHER TATA-BOX-BINDING PROTEIN 1 1 180 - -
Cmo11g00778 180 PRINTS Transcription initiation factor TFIID signature 49 68 IPR000814 GO:0003677|GO:0006352
Cmo11g00778 180 PRINTS Transcription initiation factor TFIID signature 25 40 IPR000814 GO:0003677|GO:0006352
Cmo11g00778 180 PANTHER TATA-BOX BINDING PROTEIN 1 180 IPR000814 GO:0003677|GO:0006352
Cmo11g00778 180 SUPERFAMILY TATA-box binding protein-like 100 178 - -
Cmo11g00778 180 SUPERFAMILY TATA-box binding protein-like 21 101 - -
Cmo11g00778 180 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 23 99 IPR000814 GO:0003677|GO:0006352
Cmo11g00778 180 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 100 175 IPR000814 GO:0003677|GO:0006352
Cmo11g00778 180 CDD TBP_eukaryotes 22 175 IPR033710 GO:0003677|GO:0006352
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00778 K03120 TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein - csv:101216807 318.161
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00832 Cmo11g00778 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00832 Cmo-Chr10:3916893 Cmo11g00778 Cmo-Chr11:3811378 2.58E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g17 . Blo03g01400 . . . . Bma14g00738 Bma07g01366 Cmo10g00832 Cmo11g00778 Cma10g00805 . . . . . Cpe18g00275 . . . . . . . . . . . . . . . . . . Lsi06g00382 . . . . . Bda07g00776 Bda09g00343 . Bpe11g00950 . . . . . Cma11g00770 . . . . Cpe04g00990 . . . . . . . Cla03g01408 Cam03g1488 Cec03g1525 . Clacu03g1510 Cmu03g2067 Cre03g1740 . Csa01g03036 Chy02g01316 Cme02g00348
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002633 2 2 2 3 2 2 2 2 2 1 2 2 2 1 1 2 2 1 2 3 1 2 1 2 3 3 1 2 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00778 Cmo_Chr11 FPKM 5.366744 4.676617 3.442957 3.52231 0.384796 0.794962 0.545915 3.375835 2.664933 2.501258