Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00780 ATGCGCACTAAGAATAAGAACGCCCTGGCGGATAGTTATGATGGCGATGATGATGGAATTGTGAAATACAGCTTTTCTGAATCAGAACATTTGGGTTTGATTCAATGGGAAATTGCTGGTATCGATGGGAACCTACGGCTAATAGGGTATCTTCTAACGCAAAATCAGGTACGAACTAAGTCTCCTAAAGTTGATAGCACATGGCCTTATCAAGGGGACAACGGACACAAGCTGGAGCTGCCCTCTAACCCCAAAGAAGTAGAAGATTTGCGACGTAATTCAGCCACGAATCCGCTGATTGCGTTTACGTTCGACGAGCTGAAGTTAATCACGGGGAAATTTAGACAGGATCGCGTGTTAGGCGGAGGAGGATTTGGGAGTGTTTATAAAGGTTTCATTACAGAGGATTTGAGGGAAGGAATTGTTTCTCTTCCAGTTGCTGTTAAGGTTCATGATGGATTTAATAGTTATCAAGGCCACAGGGAATGGCTGGCAGAAGTCATATTTCTGGGGCAGCTTTCTCATCCTAATTTGGTTAAGTTGATTGGATATTGTTGCGAAGACGAGCATCGGGTGCTCGTTTATGAGTACATGGCTCGAGGGAGCGTGGAAAACAATCTGTTTTCAAGAGTGCTGCTTCCTTTGCCTTGGACCATCAGAATGAAAATTGCCTATGGTGCAGCAAAAGGACTGGCATTTCTACACGAAGCTGAAAAGCCCGTCATCTATCGTGATTTCAAGACGTCGAACATTCTGCTCGATTCGGACTATAATCCAAAGCTTTCGGACTTCGGTCTCGCAAAAGATGGACCGGTTGGTGACAAATCTCACGTCTCGACTCGTATAATGGGAACATATGGATACGCTGCACCGGAGTATATATTGACAGGCACGAGTTCTTTCTTTGCCTTTATCTTTTGGTTTCTGCCGGGCATCACATTAATTTCAAAGAGGGTAAATGGCTTCCGCCTTCACATCCATGTCTTCAATCGGTACCCTTGCTGCGCCTAG 1011 45.0 MRTKNKNALADSYDGDDDGIVKYSFSESEHLGLIQWEIAGIDGNLRLIGYLLTQNQVRTKSPKVDSTWPYQGDNGHKLELPSNPKEVEDLRRNSATNPLIAFTFDELKLITGKFRQDRVLGGGGFGSVYKGFITEDLREGIVSLPVAVKVHDGFNSYQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLVYEYMARGSVENNLFSRVLLPLPWTIRMKIAYGAAKGLAFLHEAEKPVIYRDFKTSNILLDSDYNPKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYILTGTSSFFAFIFWFLPGITLISKRVNGFRLHIHVFNRYPCCA 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3834396 3844054 + CmoCh11G007800.1 Cmo11g00780 391399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00780 336 Gene3D Transferase(Phosphotransferase) domain 1 198 306 - -
Cmo11g00780 336 SUPERFAMILY Protein kinase-like (PK-like) 91 300 IPR011009 -
Cmo11g00780 336 Gene3D Phosphorylase Kinase; domain 1 78 197 - -
Cmo11g00780 336 PANTHER OS01G0588500 PROTEIN-RELATED 57 299 - -
Cmo11g00780 336 ProSiteProfiles Protein kinase domain profile. 114 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g00780 336 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL16-RELATED 57 299 - -
Cmo11g00780 336 ProSitePatterns Protein kinases ATP-binding region signature. 120 149 IPR017441 GO:0005524
Cmo11g00780 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Cmo11g00780 336 Pfam Protein kinase domain 115 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00780 - - - cpep:111792991 485.337
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00837 Cmo11g00780 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00780 Cmo-Chr11:3834396 Cmo06g00170 Cmo-Chr6:921199 1.52E-106 dispersed
Cmo10g00837 Cmo-Chr10:3941622 Cmo11g00780 Cmo-Chr11:3834396 2.44E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g21 Blo03g01017 Blo03g01402 Bda02g00670 . . . . Bma07g01363 Cmo10g00837 Cmo11g00780 Cma10g00808 . . . . . Cpe18g00272 Bhi02g01724 . . . . . . . . . . . . . . . Cone18ag0011 Cone11ag1582 Lsi06g00388 . . . . . . Bda09g00346 . . . . . . . Cma11g00772 . . . . Cpe04g00988 . . . . . . . Cla03g01404 . . . . . . . Csa01g03041 Chy02g01319 Cme02g00352
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001315 2 3 3 3 3 0 4 2 0 1 2 0 4 1 0 3 0 0 3 0 2 0 0 0 2 2 0 0 0 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74668 PF00069 Pkinase 3.70E-31 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00780 Cmo_Chr11 FPKM 16.314795 17.454754 7.291513 7.072 66.305847 66.603432 67.567741 0.954128 0.961054 1.111427