Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00806 ATGGATTTTCAGGTGGTGGTCTTAGCCGGCGGCACTTCGAAGAATCTCGTTCCTATTGTTTCCAAGGAGCTTCCCAAGGCATTACTGCCGGTGGCGAATCGTCCGGTCCTCTCGTACGTTTTGGAGCTCTTAGAACTCAGTAACCTTAAGGATCTCATTGTTGTCGCTGAAGGTGAAGATGTGGCTCTTCATATTGGAAGTTGGATATCAGGGGCTTATGATGGTCGTCTACGTGTAGAGGTTACTTCTGTACCAGAAGATGTTGGAACCGTGGGTGCACTTCGGGCCGTTGCTCACCATTTGACAGCAAATGATATTTTGGTTGTGAGTGGTGATCTTGTTTCTGATGTTCCTCCTGGTGCAGTTGCAGCTCTGCATAGACGACATGATGCTGTCGTTACTGCTATGCTCTGCTCTGTTCCAGTCAGTGGACCTTCAGAGTCTGGATCCTCTGGTGGAAAAGATAAGACCAAAAAAGCAGTAGTCCACAATATTGTTGGACTTGATCCTACCAAGGAGTTTTTACTATATATAGCGACAGCTGCTGAAGTTGAGAAAGACTATAAAATTCAGAAGAGCATACTCCGTGCAGTTGGCCAGATGGATATCCGAACTGATCTCATGGATGCGTATATGTATGCGTTCAAAAGATCTGCTTTGCAAGAAGTTCTAGATCAAAAAGAAAATTTCCGAAGCTTAAGACAAGACGTGTTGCCCTATCTTGTGCGGAGCCAGTTGAGGTCCGAAGTTTTATCAAACGGAACGCCACAAGCGGAAGAAAATGGGAGTGAGAAGGTTGGTTCCCACAAGAACAAAGCCTTGCTTTCACGGATCCTCTCTAATTCATCTACTACAAGTTTTCATGATCTTCATGCATATGGCACTAATGAATCTATTCCTGTTCGAAAAACGCATAAATGCTGTGTTTATATTCCCGCTAGTAGCAAGTATTGTGCTCGCTTATATTCAATTCAAGCATACAGCGACATTAATCGGGATGTTATTGGAGAGGCAAGCCATCTTTCAGGTTACTCATTCTCTGCTCAAAATAACATCATTCATCCTTCAGCACAACTCGGATCAAAATCCACCGTCGGACCCCATTGTATGTTAGGAGAAGGTTCACAGATGGGTGACAAATGTAGCGTGAAACGCTCAGTCATTGGCCGCCATTGCCGGATAGGTTCCAATGTGAAGATTGCCAATTCCGTCGTCATGGATCATGTTACCATTGGAGATGGTTGTTCAATTCAAGGTTCGGTTATCTGCAGCAACGTACAACTTCAGGAGCGCGCCGTTTTGCGAGATTGTCAAGTAGGAGCAGGTTTTGTGGTGACTGCTGCCTGTGAGTACAAAGGCCATTGCACTGTTCGCCCGCCGCTCCTGCCCGACGCGGTCCCAGCCGCCGCCCCCCCCGTACGCTGCAATCTCAGCCTTCGACGGACTCGCCGCTGCTCCCTCCCTCCCTCTTACACTCTTTCGCCTCTCCGAGCAATCAGAGTTTCTTGTTTCTGTTTGCCCCTAACCCTTACCGTTGGTGAGATTGCGCTGCCGCTCAGTTTAAGGATCACCCCCGAGAAACAGTTCAAAACGCAGCTCCTACGCTTTTGCAAAATCGCACGCAACTGCTGGTCTTTCTCAGAACTAGGTAAAATGGGTGATCTGGAAACTCAAAGAATTAGAAACATATGTATATTAGCACATGTTGACCATGGCAAAACGACGCTTGCCGACCATCTTATTGCCTCCTCAGGGGGTGGTTTGATCCACCCGAAGATGGCAGGCCGCCTCCGTTTCATGGATTATCTTGATGAGGAACAAAGGAGGGCGATTACTATGAAGAGCTCTTCGATTGGTCTACGGTACAAGGAATACTCCATAAACCTCATTGATTCGCCTGGCCATATGGATTTTTGCAGTGAAGTGTCGACTGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCTGTGGAGGGTGTGCACATTCAAACCCATGCTGTTTTGCGACAGGCTTGGATTGAGAAGCTTACGCCATGTTTGGTTCTTAATAAGATCGATAGATTGATATGTGAGTTGAAGTTGAGTCCTATGGAGGCGTATACTCGTTTGTTGAGGATTGTTCATGAAGTTAATGGGATAATGAGTGCGTACAAGTCTGAGAAATATTTGTCTGATGTGGATTCAATACTTGCAAGCTCTACAGGTGAGGTAAATGATGAGAACCTCGAGTTAATTGAGGATGACGAGGAAGATACATTTCAACCCCAGAAAGGGAATGTTGTGTTTGTGTGTGCGTTAGACGGGTGGGGATTTAGCGTTAATGAGTTCGCTGAATTTTATGCTTCAAAGCTTGGGGCAAATGTATCTGCATTGAAGAAGGCCTTGTGGGGTCCTCGGTATTTTAATGCAAAGACGAAGATGATTGTTGGAAAGAAGGCCTTGGCGGGAGGAAGTAAAGCTCGACCTATGTTTGTTCAATTTGTGCTTGAAAGACTTTGGGAAGTTTATGGGGCTGCTCTAGAAACTGATGGGAATAAGGAGGTGCTTCAAAAGGTTAATAGCACGTTTAATTTGAATATACCAGCTCGAGAACTTTCTAACAAGGATCCAAAGGTGGTTCTTAATGCTATTATGAGTCGTTGGCTTCCTCTTTCAAATGCAATATTATCAATGGTTGTTAACTGTATGCCTGACCCAATTGCTGCACAATCATTTCGAATATCACGGTTGCTTCCAAAGAGGGATGTCATTGATGCTGAAGTTGATGTCAATGTGCTAACCGGGGCAGATCTTGTCAAGAAATCCATTGAAACTTGTGATACGAGGCCTGAGGCTCCATTTGTTGCTTTTGTATCCAAGATGTTTGCAGTGCCAGTTAAAATGCTTCCAAGGAGGGACGATCATGGCGGGACTACTAATATTTCATCTGATGATGGTGGCGATGGTGAATCAGACGAGTGTTTCCTCGCATTTGCAAGGATATTTAGTGGGGTTCTTTATTCTGGACAGAGAGTGTTCGTGCTTTCAGCTTTATATGACCCAACGAAAGGGGAATCGATGCAAAAGCACATTCAGGAGGTTGAGCTGCATTCATTTTATCTAATGATGGGCCAAGGCTTGAAACCAGTGACCTCCGTAAAAGCAGGAAACCTTTTAGCAATTCGTGGTCTTAGCCATCACATACTGAAAAGTGCAACTCTTTCATCCACAAGAAATTGCTGGCCTTTCTCAAGTATGGCATTCCAGGTTGCTCCAACTCTGAGGGTTGCACTCGAGCCATCTGATCCTGGAGACATAGGTGCCTTATTGAAAGGTTTAAGGCTTTTAAATCGAGCAGACCCTTTTGTAGAGGTAACTGTTTCATCTCGAGGAGAACATGTACTTGCTGCAGCTGGAGAAGTCCATCTTGAGAGATGCATAAAGGATTTGAAGGAGAGGTTTGCCAGGGTAAGCTTGGAGGTCTCTCCACCTCTTGTATCTTATAAAGAAACAATTGAAGGCGAGGCATCTAGTGTGTCGGATTATTTTAAAGTGTTATCTGAAAGCACGGAGTGTGTCGTTAAGAAAACCCCAAATGGTAGATGTGTTGTCAGAGTGCAGGTACTAAAACTTCCACTTGCTCTAGCTAAAGTACTTGATGAAAATTCTGGTGTTCTGGGCGATATTATTGGCGTCAAGCTGGGGCAAAGCTATAAAAACTTGGAAACAAAGAGATCGACTTTGAGGGAAAATGAGAATCCAGCAGAAACATTAAAGAAACTCATATCGGATGCAGTGTGTAGCGATGTATCGTCGAAGGATGACAAACATAATGCACAGTGGTCAAAGCTTCTTCGGCGAATTTGGGCACTTGGACCACAGCAGATTGGTCCTAACATTCTGATTAACCCAGATCCTAAAGTAAATGATTCTGATTGCTCTGTTCTTATTCGGGGTTCATCTCATGCATCACAGAGACTGGGTTTTGTGGACGGTTCTTCAAATGATGATTTGGATGCTGAAACATCGTCGGTAAGTGATGTTGCTTCTGTAGCATCATCAGAAGGAGCTCAGACATTAAGCATGGAAGCAGCATCTCTTGAGAACAGTGTTCTATCTGGGTTTCAGCTTGCTACATCAGCTGGGCCCTTATGTGATGAACCTCTGTGGGGGTTGGCGTTTATTGTCGAGGCTTCTATTTCTTCATTGCCTGGGAATTCAGATGAGTCCGAACCTCCCTTTCAATCAGAGAATAACGCTATCTTTTCTGGGCAAGTTATGGCAGCTGTAAAGGATGCCTGTAGAGCAGCTGTACTTCAAAAGAAACCTCGGCTTGTCGAAGCCATGTACTTCTGTGAATTGAACACTCCCACCGAGTATTTGGGTCCAATGTATGCTGTACTTGCTCGAAGGCGAGCCCGGGTTTTGAAAGAAGAAATGCAGGAAGGTTCACCTTTGTTTACTGTGCACGCATATGTGCCAGTTTCAGAGAGCTTTGGTTTTGCAGATGAGTTAAGGAGGTGGACTTCTGGAGCTGCAAGTGCTCTTCTAGTGCTTAGCCACTGGGAAGAACTATGTGAAGATCCGTTCTTCGTCCCGAAGACGGAAGAAGAAATTGAAGAGTTCGGAGATGGTTCTAGCGTGCTTCCCAACACAGCCAGAAAGCTCATTGATACTGTAAGACGGCGTAAGGGTCTTCCTGTGGAAGAAAAAGTTGTGCAGCATGCTACAAAGCAGAGAACACGTGCTCGAAAAATTCCTGCTTACATGAGAGATTTGTATTCGGCCTGGTCCATCTGGAGTTCGCTCCCTGACATGGCCATCCGGGACGTCGTGAAGCTTGGACGACGACACCCTTACCAGCCTGAAAGGGTGACTGACTGGAGGAGGAAAAGGGTCCTTGGAAGCTTGCTGCAAATATGGTTGTGTCACTTGGATCTTGTGAAGGTGGCTGCGGAGGTAAGTACATGTCATGGCCCTCATAGCCACTGA 4977 45.49 MDFQVVVLAGGTSKNLVPIVSKELPKALLPVANRPVLSYVLELLELSNLKDLIVVAEGEDVALHIGSWISGAYDGRLRVEVTSVPEDVGTVGALRAVAHHLTANDILVVSGDLVSDVPPGAVAALHRRHDAVVTAMLCSVPVSGPSESGSSGGKDKTKKAVVHNIVGLDPTKEFLLYIATAAEVEKDYKIQKSILRAVGQMDIRTDLMDAYMYAFKRSALQEVLDQKENFRSLRQDVLPYLVRSQLRSEVLSNGTPQAEENGSEKVGSHKNKALLSRILSNSSTTSFHDLHAYGTNESIPVRKTHKCCVYIPASSKYCARLYSIQAYSDINRDVIGEASHLSGYSFSAQNNIIHPSAQLGSKSTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIGDGCSIQGSVICSNVQLQERAVLRDCQVGAGFVVTAACEYKGHCTVRPPLLPDAVPAAAPPVRCNLSLRRTRRCSLPPSYTLSPLRAIRVSCFCLPLTLTVGEIALPLSLRITPEKQFKTQLLRFCKIARNCWSFSELGKMGDLETQRIRNICILAHVDHGKTTLADHLIASSGGGLIHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYKEYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLSDVDSILASSTGEVNDENLELIEDDEEDTFQPQKGNVVFVCALDGWGFSVNEFAEFYASKLGANVSALKKALWGPRYFNAKTKMIVGKKALAGGSKARPMFVQFVLERLWEVYGAALETDGNKEVLQKVNSTFNLNIPARELSNKDPKVVLNAIMSRWLPLSNAILSMVVNCMPDPIAAQSFRISRLLPKRDVIDAEVDVNVLTGADLVKKSIETCDTRPEAPFVAFVSKMFAVPVKMLPRRDDHGGTTNISSDDGGDGESDECFLAFARIFSGVLYSGQRVFVLSALYDPTKGESMQKHIQEVELHSFYLMMGQGLKPVTSVKAGNLLAIRGLSHHILKSATLSSTRNCWPFSSMAFQVAPTLRVALEPSDPGDIGALLKGLRLLNRADPFVEVTVSSRGEHVLAAAGEVHLERCIKDLKERFARVSLEVSPPLVSYKETIEGEASSVSDYFKVLSESTECVVKKTPNGRCVVRVQVLKLPLALAKVLDENSGVLGDIIGVKLGQSYKNLETKRSTLRENENPAETLKKLISDAVCSDVSSKDDKHNAQWSKLLRRIWALGPQQIGPNILINPDPKVNDSDCSVLIRGSSHASQRLGFVDGSSNDDLDAETSSVSDVASVASSEGAQTLSMEAASLENSVLSGFQLATSAGPLCDEPLWGLAFIVEASISSLPGNSDESEPPFQSENNAIFSGQVMAAVKDACRAAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEEKVVQHATKQRTRARKIPAYMRDLYSAWSIWSSLPDMAIRDVVKLGRRHPYQPERVTDWRRKRVLGSLLQIWLCHLDLVKVAAEVSTCHGPHSH 1658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3985363 3999338 + CmoCh11G008060.1 Cmo11g00806 391425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00806 1658 Gene3D - 1438 1573 - -
Cmo11g00806 1658 Gene3D Translation factors 901 1084 - -
Cmo11g00806 1658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 899 IPR027417 -
Cmo11g00806 1658 SUPERFAMILY Ribosomal protein S5 domain 2-like 1161 1441 IPR020568 -
Cmo11g00806 1658 CDD EF2_II 948 1072 - -
Cmo11g00806 1658 SUPERFAMILY EF-G C-terminal domain-like 1085 1159 IPR035647 -
Cmo11g00806 1658 SMART EFG_C_a 1439 1528 IPR000640 -
Cmo11g00806 1658 Pfam Elongation factor Tu GTP binding domain 559 897 IPR000795 GO:0003924|GO:0005525
Cmo11g00806 1658 PRINTS GTP-binding elongation factor signature 680 689 IPR000795 GO:0003924|GO:0005525
Cmo11g00806 1658 PRINTS GTP-binding elongation factor signature 562 575 IPR000795 GO:0003924|GO:0005525
Cmo11g00806 1658 PRINTS GTP-binding elongation factor signature 628 638 IPR000795 GO:0003924|GO:0005525
Cmo11g00806 1658 PRINTS GTP-binding elongation factor signature 608 616 IPR000795 GO:0003924|GO:0005525
Cmo11g00806 1658 PRINTS GTP-binding elongation factor signature 644 655 IPR000795 GO:0003924|GO:0005525
Cmo11g00806 1658 Gene3D - 553 778 IPR027417 -
Cmo11g00806 1658 CDD EF2 561 783 - -
Cmo11g00806 1658 SUPERFAMILY Nucleotide-diphospho-sugar transferases 4 425 IPR029044 -
Cmo11g00806 1658 Gene3D Hexapeptide repeat proteins 326 453 - -
Cmo11g00806 1658 CDD eEF2_snRNP_like_C 1442 1520 - -
Cmo11g00806 1658 Gene3D Yeast translation eEF2 (G' domain) 779 884 - -
Cmo11g00806 1658 PANTHER - 556 1580 - -
Cmo11g00806 1658 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 558 790 IPR000795 GO:0003924|GO:0005525
Cmo11g00806 1658 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 276 IPR029044 -
Cmo11g00806 1658 Pfam Elongation factor G C-terminus 1440 1523 IPR000640 -
Cmo11g00806 1658 CDD EF2_snRNP_III 1087 1158 - -
Cmo11g00806 1658 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 556 1580 - -
Cmo11g00806 1658 SUPERFAMILY Translation proteins 939 1081 IPR009000 -
Cmo11g00806 1658 SUPERFAMILY EF-G C-terminal domain-like 1442 1540 IPR035647 -
Cmo11g00806 1658 CDD aeEF2_snRNP_like_IV 1158 1446 - -
Cmo11g00806 1658 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1085 1162 - -
Cmo11g00806 1658 CDD LbH_eIF2B_gamma_C 370 447 - -
Cmo11g00806 1658 Pfam MobA-like NTP transferase domain 5 135 IPR025877 -
Cmo11g00806 1658 Gene3D - 1182 1436 IPR014721 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00806 Cmo-Chr11:3985363 Cmo20g00275 Cmo-Chr20:1342518 1.35E-132 dispersed
Cmo12g01115 Cmo-Chr12:10188749 Cmo11g00806 Cmo-Chr11:3985363 1.05E-15 dispersed
Cmo10g01045 Cmo-Chr10:5504877 Cmo11g00806 Cmo-Chr11:3985363 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00806 K14536 - csv:101220903 1813.51