Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00834 ATGGAAGACGAAGCATCCTCCACCTTCATTTCCTTCACTAAGTCCCCTCTCCTCATAGATGAAGTTTCAGATTCTAATTTCTCAGATTATGCCTTACCTGATGCCAAGCGGATGAGATTAGACCATGATCTTAATGATGTAGCCACCGTCGACAAATTTAAAGGTGTAGTGCCGCAACAGAATGGCCGCTGGGGAGCGCAGATCTATGCGAACCACCAGAGGATCTGGCTCGGTACCTTCAAATCGGAGAAAGACGCTGCCATGGCTTATGACAGTGCCGCTATCAAGCTTCGCACCAGAGACTCTCACCGGAATTTCCCATGGACTCGCCTATCAATCGAGGAGCCGAATTTTCAAAGCAAATTCTCCATAGACGCCATTCTCAGCATGATCAAAGATGGATCGTATTCCTCGAAATTTTCCGCCTACTTACGAACGAAGTCTCAAATTAGCGACTCGAATATACAGAATCTCCAAACTATTGAAAATGGAGACCGCGATGGCCATTTCTCTTGCAGCCATCTATTCCAGAAGGAATTAACACCAAGCGACGTCGGAAAGCTCAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAGCACTTTCCGTACATCAGCGAGAGTGCAGAGGAGAACAGCGACGATATCGAAATCGTCTTCTACGATACATCGATGAAGACATGGAAGTTCCGATACTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTCACCAGAGGCTGGAATCGATTCGTGAAAGAGAAAAAGCTGAAGGCGAACGACATCATCACGTTTTACACATACGAAAGCTGCGGAAGAGACAAAAATGGCGGAACATTGATTTTCATTGACGTAATCTACAAGAAACCGGAAGATGACCGGAGCGAGAGTAGTTGCTTAGCGGCGGAGAGAGAGAGTATCAAGAACGAACAATTGCAGAGAGACTTAGGGCTTGATCGGGAGGACTGCCCGATTGATCTTGTTGCAGTATCCATTGTCGCGCTCTCTCCGTCGCCAAGAAATATAGCCATCTTCTATAAGATGTCGACAACCGGAGCCTATTATCTTCCGATGTGCACACTGAGAAACAGCAAGCTCTCTTCTGCTAAACTTAGAAATGTCTACAATGTCTCCTCTTTGAAACACTTTCAGCTGAATTCCATCACTTTATCTTCTACACGAACTGGGAAGCTTGCAACTATTGCTATCTCTGGATCTAATGAACACCAACCCGTCTCTGGGTTGCCGATTGATTTGAAAGGTAAGCGGGCATTCATTGCTGGTGTAGCTGATGACAATGGTTATCGTTGGGCAATAGCAAAATCTCTTGCTGCTGCCGGAGCTGAAATTATTGTTGGTACGTGGGTGCGTGCTTTAAACATCTTCGAAACCAACTTGCAACGTGGAAAGTTCGATAAATCTCGATCATTGCGAGATGGATCGTTAATGGAGTTCGCGAAAATATATCCCCTGGATGTAGATTTTGACAATCTTGAGGATGTTCCAGAAAATATAAAAACAAAGAAGCAGTATGCAGTTTGCAAAAATTGGACAGTTCAGGAAGTAGCAGAATCAGTTAAGAAGGATTTTGGAACCATTGACATCCTTGTGCATTCACTTGCAAATGGACCGGAGGGAAGTAAACCTCTCTTAGAGACCTCCAGGAAAGGTTACCTAGCTGCTTTCTCTGCATCAAGCTACTCTTACATCTCTCTTCTCAAGCATTTCGCTCCAATAATGAATCCAGGCGGTTCGTCGATCTCTCTGACATACATTGCTTCCAAAAGGATCATTCCTGGATATGGGGGAGGTATGAGTTCAGCAAAAGCTGCACTGGAGAGTGACTTACGAGTGCTTGCTTTCGAGGTGGGTAGAAAAAACAAGGTCAGAGTGAACGCCATATCCGCTGGTCCTCTAAGAAGCCGGGCATCGAAAGCAACTGAATACATCGATTCGATGATAGACTACTCACTAGCAAATGCACCTCTGCAGAAACCATTATCTGCAGAGGAGGTGGGGAATGCAGCTGCCTTCTTGGCATCTCCTTTAGCGTCTGCCATAACTGGTTCTGTTATCTGTGTCGACAATGGTTTGAACACCATGGGAGTTGGAGTCGATAGCCCGACACTCAAAGGACTGTATCTTCTAAACCCCAACTGA 2157 45.53 MEDEASSTFISFTKSPLLIDEVSDSNFSDYALPDAKRMRLDHDLNDVATVDKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIKLRTRDSHRNFPWTRLSIEEPNFQSKFSIDAILSMIKDGSYSSKFSAYLRTKSQISDSNIQNLQTIENGDRDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENSDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDKNGGTLIFIDVIYKKPEDDRSESSCLAAERESIKNEQLQRDLGLDREDCPIDLVAVSIVALSPSPRNIAIFYKMSTTGAYYLPMCTLRNSKLSSAKLRNVYNVSSLKHFQLNSITLSSTRTGKLATIAISGSNEHQPVSGLPIDLKGKRAFIAGVADDNGYRWAIAKSLAAAGAEIIVGTWVRALNIFETNLQRGKFDKSRSLRDGSLMEFAKIYPLDVDFDNLEDVPENIKTKKQYAVCKNWTVQEVAESVKKDFGTIDILVHSLANGPEGSKPLLETSRKGYLAAFSASSYSYISLLKHFAPIMNPGGSSISLTYIASKRIIPGYGGGMSSAKAALESDLRVLAFEVGRKNKVRVNAISAGPLRSRASKATEYIDSMIDYSLANAPLQKPLSAEEVGNAAAFLASPLASAITGSVICVDNGLNTMGVGVDSPTLKGLYLLNPN 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4237476 4243849 + CmoCh11G008340.1 Cmo11g00834 391453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00834 718 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Cmo11g00834 718 PANTHER ENOYL-ACYL-CARRIER REDUCTASE 361 712 - -
Cmo11g00834 718 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Cmo11g00834 718 CDD ENR_SDR 420 701 IPR014358 GO:0004318|GO:0006633
Cmo11g00834 718 Gene3D AP2/ERF domain 51 108 IPR036955 GO:0003700|GO:0006355
Cmo11g00834 718 Gene3D - 421 646 - -
Cmo11g00834 718 SMART rav1_2 52 113 IPR001471 GO:0003700|GO:0006355
Cmo11g00834 718 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677
Cmo11g00834 718 SMART B3_2 176 275 IPR003340 GO:0003677
Cmo11g00834 718 ProSiteProfiles B3 DNA-binding domain profile. 176 288 IPR003340 GO:0003677
Cmo11g00834 718 CDD B3_DNA 174 281 IPR003340 GO:0003677
Cmo11g00834 718 Pfam AP2 domain 52 99 IPR001471 GO:0003700|GO:0006355
Cmo11g00834 718 Gene3D - 166 291 IPR015300 -
Cmo11g00834 718 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
Cmo11g00834 718 PANTHER ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 361 712 IPR014358 GO:0004318|GO:0006633
Cmo11g00834 718 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 419 700 IPR036291 -
Cmo11g00834 718 PRINTS Glucose/ribitol dehydrogenase family signature 604 623 IPR002347 -
Cmo11g00834 718 PRINTS Glucose/ribitol dehydrogenase family signature 626 643 IPR002347 -
Cmo11g00834 718 PRINTS Glucose/ribitol dehydrogenase family signature 661 681 IPR002347 -
Cmo11g00834 718 PRINTS Glucose/ribitol dehydrogenase family signature 530 541 IPR002347 -
Cmo11g00834 718 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Cmo11g00834 718 Pfam Enoyl-(Acyl carrier protein) reductase 512 698 - -
Cmo11g00834 718 Gene3D Enoyl acyl carrier protein reductase 647 705 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01256 Cmo11g00834 CCT
Cmo11g00834 Cmo20g00061 CCT
Cmo11g00834 Cmo20g00061 ECH
Cmo02g01256 Cmo11g00834 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02102 Cmo-Chr4:13302123 Cmo11g00834 Cmo-Chr11:4237476 2.82E-53 dispersed
Cmo10g00510 Cmo-Chr10:2288074 Cmo11g00834 Cmo-Chr11:4237476 2.66E-97 dispersed
Cmo11g00467 Cmo-Chr11:2286432 Cmo11g00834 Cmo-Chr11:4237476 7.17E-103 dispersed
Cmo11g00834 Cmo-Chr11:4237476 Cmo18g01060 Cmo-Chr18:11230116 1.81E-54 dispersed
Cmo11g00834 Cmo-Chr11:4237476 Cmo02g01256 Cmo-Chr2:7518436 2.31E-169 wgd
Cmo11g00834 Cmo-Chr11:4237476 Cmo20g00061 Cmo-Chr20:338649 8.04E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10580 PF13561 adh_short_C2 2.80E-48 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00834 K00208 K09287 csv:101219913 550.051