Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00834 | ATGGAAGACGAAGCATCCTCCACCTTCATTTCCTTCACTAAGTCCCCTCTCCTCATAGATGAAGTTTCAGATTCTAATTTCTCAGATTATGCCTTACCTGATGCCAAGCGGATGAGATTAGACCATGATCTTAATGATGTAGCCACCGTCGACAAATTTAAAGGTGTAGTGCCGCAACAGAATGGCCGCTGGGGAGCGCAGATCTATGCGAACCACCAGAGGATCTGGCTCGGTACCTTCAAATCGGAGAAAGACGCTGCCATGGCTTATGACAGTGCCGCTATCAAGCTTCGCACCAGAGACTCTCACCGGAATTTCCCATGGACTCGCCTATCAATCGAGGAGCCGAATTTTCAAAGCAAATTCTCCATAGACGCCATTCTCAGCATGATCAAAGATGGATCGTATTCCTCGAAATTTTCCGCCTACTTACGAACGAAGTCTCAAATTAGCGACTCGAATATACAGAATCTCCAAACTATTGAAAATGGAGACCGCGATGGCCATTTCTCTTGCAGCCATCTATTCCAGAAGGAATTAACACCAAGCGACGTCGGAAAGCTCAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAGCACTTTCCGTACATCAGCGAGAGTGCAGAGGAGAACAGCGACGATATCGAAATCGTCTTCTACGATACATCGATGAAGACATGGAAGTTCCGATACTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTCACCAGAGGCTGGAATCGATTCGTGAAAGAGAAAAAGCTGAAGGCGAACGACATCATCACGTTTTACACATACGAAAGCTGCGGAAGAGACAAAAATGGCGGAACATTGATTTTCATTGACGTAATCTACAAGAAACCGGAAGATGACCGGAGCGAGAGTAGTTGCTTAGCGGCGGAGAGAGAGAGTATCAAGAACGAACAATTGCAGAGAGACTTAGGGCTTGATCGGGAGGACTGCCCGATTGATCTTGTTGCAGTATCCATTGTCGCGCTCTCTCCGTCGCCAAGAAATATAGCCATCTTCTATAAGATGTCGACAACCGGAGCCTATTATCTTCCGATGTGCACACTGAGAAACAGCAAGCTCTCTTCTGCTAAACTTAGAAATGTCTACAATGTCTCCTCTTTGAAACACTTTCAGCTGAATTCCATCACTTTATCTTCTACACGAACTGGGAAGCTTGCAACTATTGCTATCTCTGGATCTAATGAACACCAACCCGTCTCTGGGTTGCCGATTGATTTGAAAGGTAAGCGGGCATTCATTGCTGGTGTAGCTGATGACAATGGTTATCGTTGGGCAATAGCAAAATCTCTTGCTGCTGCCGGAGCTGAAATTATTGTTGGTACGTGGGTGCGTGCTTTAAACATCTTCGAAACCAACTTGCAACGTGGAAAGTTCGATAAATCTCGATCATTGCGAGATGGATCGTTAATGGAGTTCGCGAAAATATATCCCCTGGATGTAGATTTTGACAATCTTGAGGATGTTCCAGAAAATATAAAAACAAAGAAGCAGTATGCAGTTTGCAAAAATTGGACAGTTCAGGAAGTAGCAGAATCAGTTAAGAAGGATTTTGGAACCATTGACATCCTTGTGCATTCACTTGCAAATGGACCGGAGGGAAGTAAACCTCTCTTAGAGACCTCCAGGAAAGGTTACCTAGCTGCTTTCTCTGCATCAAGCTACTCTTACATCTCTCTTCTCAAGCATTTCGCTCCAATAATGAATCCAGGCGGTTCGTCGATCTCTCTGACATACATTGCTTCCAAAAGGATCATTCCTGGATATGGGGGAGGTATGAGTTCAGCAAAAGCTGCACTGGAGAGTGACTTACGAGTGCTTGCTTTCGAGGTGGGTAGAAAAAACAAGGTCAGAGTGAACGCCATATCCGCTGGTCCTCTAAGAAGCCGGGCATCGAAAGCAACTGAATACATCGATTCGATGATAGACTACTCACTAGCAAATGCACCTCTGCAGAAACCATTATCTGCAGAGGAGGTGGGGAATGCAGCTGCCTTCTTGGCATCTCCTTTAGCGTCTGCCATAACTGGTTCTGTTATCTGTGTCGACAATGGTTTGAACACCATGGGAGTTGGAGTCGATAGCCCGACACTCAAAGGACTGTATCTTCTAAACCCCAACTGA | 2157 | 45.53 | MEDEASSTFISFTKSPLLIDEVSDSNFSDYALPDAKRMRLDHDLNDVATVDKFKGVVPQQNGRWGAQIYANHQRIWLGTFKSEKDAAMAYDSAAIKLRTRDSHRNFPWTRLSIEEPNFQSKFSIDAILSMIKDGSYSSKFSAYLRTKSQISDSNIQNLQTIENGDRDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENSDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDKNGGTLIFIDVIYKKPEDDRSESSCLAAERESIKNEQLQRDLGLDREDCPIDLVAVSIVALSPSPRNIAIFYKMSTTGAYYLPMCTLRNSKLSSAKLRNVYNVSSLKHFQLNSITLSSTRTGKLATIAISGSNEHQPVSGLPIDLKGKRAFIAGVADDNGYRWAIAKSLAAAGAEIIVGTWVRALNIFETNLQRGKFDKSRSLRDGSLMEFAKIYPLDVDFDNLEDVPENIKTKKQYAVCKNWTVQEVAESVKKDFGTIDILVHSLANGPEGSKPLLETSRKGYLAAFSASSYSYISLLKHFAPIMNPGGSSISLTYIASKRIIPGYGGGMSSAKAALESDLRVLAFEVGRKNKVRVNAISAGPLRSRASKATEYIDSMIDYSLANAPLQKPLSAEEVGNAAAFLASPLASAITGSVICVDNGLNTMGVGVDSPTLKGLYLLNPN | 718 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4237476 | 4243849 | + | CmoCh11G008340.1 | Cmo11g00834 | 391453 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00834 | 718 | CDD | AP2 | 52 | 109 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00834 | 718 | PANTHER | ENOYL-ACYL-CARRIER REDUCTASE | 361 | 712 | - | - | |
Cmo11g00834 | 718 | SUPERFAMILY | DNA-binding domain | 52 | 108 | IPR016177 | GO:0003677 | |
Cmo11g00834 | 718 | CDD | ENR_SDR | 420 | 701 | IPR014358 | GO:0004318|GO:0006633 | |
Cmo11g00834 | 718 | Gene3D | AP2/ERF domain | 51 | 108 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo11g00834 | 718 | Gene3D | - | 421 | 646 | - | - | |
Cmo11g00834 | 718 | SMART | rav1_2 | 52 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00834 | 718 | Pfam | B3 DNA binding domain | 176 | 267 | IPR003340 | GO:0003677 | |
Cmo11g00834 | 718 | SMART | B3_2 | 176 | 275 | IPR003340 | GO:0003677 | |
Cmo11g00834 | 718 | ProSiteProfiles | B3 DNA-binding domain profile. | 176 | 288 | IPR003340 | GO:0003677 | |
Cmo11g00834 | 718 | CDD | B3_DNA | 174 | 281 | IPR003340 | GO:0003677 | |
Cmo11g00834 | 718 | Pfam | AP2 domain | 52 | 99 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00834 | 718 | Gene3D | - | 166 | 291 | IPR015300 | - | |
Cmo11g00834 | 718 | ProSiteProfiles | AP2/ERF domain profile. | 52 | 107 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo11g00834 | 718 | PANTHER | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE | 361 | 712 | IPR014358 | GO:0004318|GO:0006633 | |
Cmo11g00834 | 718 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 419 | 700 | IPR036291 | - | |
Cmo11g00834 | 718 | PRINTS | Glucose/ribitol dehydrogenase family signature | 604 | 623 | IPR002347 | - | |
Cmo11g00834 | 718 | PRINTS | Glucose/ribitol dehydrogenase family signature | 626 | 643 | IPR002347 | - | |
Cmo11g00834 | 718 | PRINTS | Glucose/ribitol dehydrogenase family signature | 661 | 681 | IPR002347 | - | |
Cmo11g00834 | 718 | PRINTS | Glucose/ribitol dehydrogenase family signature | 530 | 541 | IPR002347 | - | |
Cmo11g00834 | 718 | SUPERFAMILY | DNA-binding pseudobarrel domain | 174 | 269 | IPR015300 | - | |
Cmo11g00834 | 718 | Pfam | Enoyl-(Acyl carrier protein) reductase | 512 | 698 | - | - | |
Cmo11g00834 | 718 | Gene3D | Enoyl acyl carrier protein reductase | 647 | 705 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01256 | Cmo11g00834 | CCT | |
Cmo11g00834 | Cmo20g00061 | CCT | |
Cmo11g00834 | Cmo20g00061 | ECH | |
Cmo02g01256 | Cmo11g00834 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02102 | Cmo-Chr4:13302123 | Cmo11g00834 | Cmo-Chr11:4237476 | 2.82E-53 | dispersed | |
Cmo10g00510 | Cmo-Chr10:2288074 | Cmo11g00834 | Cmo-Chr11:4237476 | 2.66E-97 | dispersed | |
Cmo11g00467 | Cmo-Chr11:2286432 | Cmo11g00834 | Cmo-Chr11:4237476 | 7.17E-103 | dispersed | |
Cmo11g00834 | Cmo-Chr11:4237476 | Cmo18g01060 | Cmo-Chr18:11230116 | 1.81E-54 | dispersed | |
Cmo11g00834 | Cmo-Chr11:4237476 | Cmo02g01256 | Cmo-Chr2:7518436 | 2.31E-169 | wgd | |
Cmo11g00834 | Cmo-Chr11:4237476 | Cmo20g00061 | Cmo-Chr20:338649 | 8.04E-160 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10580 | PF13561 | adh_short_C2 | 2.80E-48 | CL0063 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00834 | K00208 | K09287 | csv:101219913 | 550.051 |