Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00844 ATGGAGAATCTTATGATGGTCGATGATGCGTTGGGAGATTGTTCGGATATGGAAGTTGATGATATAAGGTGTGACAATATTGCAGAGAAAGATGTTAGTGATGAAGAAATCGAACCCGAGGATTTGGAGAAGCGTATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAACGACAGAAGATTGCGGCACAACAGGCTGCGGAGAAGCAGAAGCCAAAGCATACGTCTGACCAGGCTCGGAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAGTACATGTTAAAACTTATGGAAGTATGTAAAGCTCGGGGATTTGTATATGGCATTATTCCAGAAAAGGGGAAACCGGTTAGCGGTGCTTCTGATAACATTCGAGCGTGGTGGAAAGAAAAGGTTAAATTTGATAAGAACGGGCCGGCTGCCATAGCCAAGTATGAAGCAGAATGTCTTGCCAAGGGAGAGACAGATGGAAATGGAAATAGGAATTCGCAGAGCGTTCTTCAAGATCTTCAGGATGCGACACTCGGGTCTCTTTTGTCTTCGTTGATGCAACATTGTGATCCCCCTCAACGGAAGTACCCTTTAGAAAAAGGGGTCCCTCCACCTTGGTGGCCCTCTGGAAATGAAGCTTGGTGGGAAAAACTCGGGCTATCTCATGGCGTTAGTCCTCCTTATAAGAAGCCACATGATTTGAAGAAGATGTGGAAGGTCGGGGTCTTAACGGCTGTGATAAAGCATATGTCTCCTGATATTGCAAAGATAAGGAGGCATGTACGTCAGTCGAAGTGCTTACAAGACAAGATGACAGCAAAGGAGAGTGCAATATGGTTGGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGACAACCGAGCAGCGATAATGGGGCATCTGAAATTACAGAGACACCGGTTGGTGGTCGTGGTGGAAAGCAAGCTGCCATTAGCAGTGACAGTGACTATGATGTTGATCTTGCAGATGATGGTGGGTCAGTTTCTCGTAAAGACGACAGGAGGAATCGATTGGTGGATGCCGAGCCATCCAGTAATCTACGCAACAATGCTCCTCAACCTGCTCAAGTAAAGGAGCAAGGTGAACAGCATCGGAGAAAAAGACATCGTGGTGGCAGGTCAAAACCTGCCGATGAAACACCGAACGAGGAAGAATTAAACGTCGAGCCAAGAAATACTCATCTAGATATAAATCATTCTGATGTACCATTAGGTAGACATGAAATTCCAGGAAACCTACCAGAAAAGGATACTGTCACAGCTTTGAGGCCACTGGAGAAAGATATGGATGTCCGATCAGACGTACCAGCTCCCCAGTTCGACATGTTCTCCACGAGTGCCACGGATAATATCAACATAATTTCCACACAGAGCATGTATGTTGATGGAAGGCCTTTGTTGTATCCCGTAATGCAGAATGTCGACATGCAACAGGAAAGCGCTTACGATATTTATAATCCACCAGTGGAATATAATTCCAACTATGATGTACAGCATCCTCAATTTGTTAACGAGCCTCAATTGAGATCGGAGGAAGGAGCACACGTGCCAACACAAAATAGAAACGACGAGACGATTGGAGGAGATTTCAACTATATAAAAGAAACGTTCGACAACAAACAAGATAGGCCTGTTGACTCACAGTTTGGATCACCAATCAATAGTCTCTCATTAGATTATGGAGCATTTAACAGTCCGTTCCATCTTGGAATCGACGTTTCAAGCTCGTTCGATGACTTCTTGGTTGACGACGATTTGATCCAATACTTCGGAGCTTAG 1797 44.69 MENLMMVDDALGDCSDMEVDDIRCDNIAEKDVSDEEIEPEDLEKRMWKDRIKLKRIKERQKIAAQQAAEKQKPKHTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAKGETDGNGNRNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEAWWEKLGLSHGVSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASEITETPVGGRGGKQAAISSDSDYDVDLADDGGSVSRKDDRRNRLVDAEPSSNLRNNAPQPAQVKEQGEQHRRKRHRGGRSKPADETPNEEELNVEPRNTHLDINHSDVPLGRHEIPGNLPEKDTVTALRPLEKDMDVRSDVPAPQFDMFSTSATDNINIISTQSMYVDGRPLLYPVMQNVDMQQESAYDIYNPPVEYNSNYDVQHPQFVNEPQLRSEEGAHVPTQNRNDETIGGDFNYIKETFDNKQDRPVDSQFGSPINSLSLDYGAFNSPFHLGIDVSSSFDDFLVDDDLIQYFGA 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4288727 4290523 + CmoCh11G008440.1 Cmo11g00844 391463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00844 598 Gene3D - 160 298 IPR023278 GO:0003700|GO:0005634
Cmo11g00844 598 Gene3D - 74 152 IPR023278 GO:0003700|GO:0005634
Cmo11g00844 598 MobiDBLite consensus disorder prediction 379 393 - -
Cmo11g00844 598 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700|GO:0005634
Cmo11g00844 598 MobiDBLite consensus disorder prediction 71 85 - -
Cmo11g00844 598 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 1 597 IPR006957 GO:0005634
Cmo11g00844 598 MobiDBLite consensus disorder prediction 62 85 - -
Cmo11g00844 598 PANTHER ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN 1 597 - -
Cmo11g00844 598 Pfam Ethylene insensitive 3 40 287 IPR006957 GO:0005634
Cmo11g00844 598 MobiDBLite consensus disorder prediction 348 363 - -
Cmo11g00844 598 MobiDBLite consensus disorder prediction 289 393 - -
Cmo11g00844 598 MobiDBLite consensus disorder prediction 329 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00844 Cmo-Chr11:4288727 Cmo16g00750 Cmo-Chr16:3765531 8.02E-97 dispersed
Cmo11g00844 Cmo-Chr11:4288727 Cmo15g00557 Cmo-Chr15:2663581 3.62E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10581 PF04873 EIN3 1.10E-126 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00844 K14514 - csv:101210347 995.727