Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00851 ATGGAACATGACGAGGCAAGCTGTCAAGCTCCCCCTGAGGGTCCCTTTCTGTGCATTAACAACTGTGGCTTTTTCGGAAGTGCTGCTACTATGAATATGTGTTCCAAGTGCCACAAGGATTTGATGTTGAAACAAGATCATGCTCAATTGAGTGCTTCAACTATTGGAAGTATCATGAATGGATCGTCTAATTCTAACCAAAATGAACCCTTTGTCACCGCCAGTGTCGATGTGCAAGTTAGTTTGGCGGAACCTAAGATCATCTCAGTGCAGGCATCTCCTATGGTTTCTGAAGGGAGCAGTGAAGTGAAGCCTAAGGACAGACCTAGACGTTGCAACAGTTGCAACAAGCGAGTTGGATTAATGGGATTCGACTGTCGATGTGGTAATATCTTCTGTGCCATTCATCGTTACTCCGACAAACACGATTGCCCCTTTGATTATCGCACCTCTGCACAGGATGCAATTGCTAAAGCCAACCCCATTGTGAAGGCGGAGAAGCTCGATAAGATCTAG 516 45.74 MEHDEASCQAPPEGPFLCINNCGFFGSAATMNMCSKCHKDLMLKQDHAQLSASTIGSIMNGSSNSNQNEPFVTASVDVQVSLAEPKIISVQASPMVSEGSSEVKPKDRPRRCNSCNKRVGLMGFDCRCGNIFCAIHRYSDKHDCPFDYRTSAQDAIAKANPIVKAEKLDKI 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4342558 4343073 + CmoCh11G008510.1 Cmo11g00851 391470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00851 171 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Cmo11g00851 171 Gene3D - 88 167 IPR035896 -
Cmo11g00851 171 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
Cmo11g00851 171 Pfam AN1-like Zinc finger 112 148 IPR000058 GO:0008270
Cmo11g00851 171 Pfam A20-like zinc finger 17 39 IPR002653 GO:0003677|GO:0008270
Cmo11g00851 171 SMART AN1_Zf_4 112 149 IPR000058 GO:0008270
Cmo11g00851 171 Gene3D - 1 69 - -
Cmo11g00851 171 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 171 - -
Cmo11g00851 171 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 171 - -
Cmo11g00851 171 SUPERFAMILY AN1-like Zinc finger 100 166 IPR035896 -
Cmo11g00851 171 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Cmo11g00851 171 ProSiteProfiles Zinc finger AN1-type profile. 106 152 IPR000058 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00851 Cmo20g00327 CCT
Cmo11g00851 Cmo20g00327 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01276 Cmo-Chr2:7608081 Cmo11g00851 Cmo-Chr11:4342558 6.19E-82 dispersed
Cmo11g00851 Cmo-Chr11:4342558 Cmo17g00921 Cmo-Chr17:8235913 5.15E-72 dispersed
Cmo03g00094 Cmo-Chr3:1327980 Cmo11g00851 Cmo-Chr11:4342558 6.23E-75 transposed
Cmo10g00981 Cmo-Chr10:4958217 Cmo11g00851 Cmo-Chr11:4342558 2.36E-110 wgd
Cmo11g00851 Cmo-Chr11:4342558 Cmo20g00078 Cmo-Chr20:406152 4.41E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00851 - - csv:101211329 304.679