Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g00859 | ATGCAGTCGAAATCCGAAACCAATAATCAGTTTGAATCCGATCCAAACGGTACTCCATCCACGAGTATCTATTACGAACCCTGGTGGCGTGGTATTGGATACAACCCTATTCCGCTACCTATGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAACGATGGCCAGTCGGTGTCTAATAATGACGTCAATGATGAAGAAGATGTTTCCAAAGAAGTTCAAGCTACTGGATCTCCACATTCTGCTGGAAATTACAGACAGGCTGCTCAGAAGATGCAGCATGTTTCATCTACTTTTCCAGTAATGCATGGTGAATGTCTGATGCAGTCGACACAACTCGAACTTGTAGGCCACTCTATTGCATGTGCGTCAAATCCATATCAGGATCCATCTTATGGCGGAATGATGGCTTTTTATGGCCATCAGCCCTTGGGCTATCCTATGGTCGGAATGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTATTGGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGAGAAGGCAAGCGCGTGCAAAAGCCGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGCCATATCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACAAGGGGTAGCGGAGGGCGTTTCACCAAGAAAAACGAAGCTGATGATGGAAAGGAGATGCATTCTGATGAAGTAAATGAGAATGGTCGCCATCTAAATGACGGTTCTAAGCAGCAGAATGGAAGCTCCTTGACGAACATGGCCTCTGATTAG | 816 | 46.08 | MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRTRGSGGRFTKKNEADDGKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASD | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4378215 | 4382536 | + | CmoCh11G008590.1 | Cmo11g00859 | 391478 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g00859 | 271 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 34 | 259 | - | - | |
Cmo11g00859 | 271 | MobiDBLite | consensus disorder prediction | 195 | 271 | - | - | |
Cmo11g00859 | 271 | MobiDBLite | consensus disorder prediction | 39 | 97 | - | - | |
Cmo11g00859 | 271 | PRINTS | CCAAT-binding transcription factor subunit B signature | 175 | 197 | IPR001289 | GO:0003700|GO:0006355 | |
Cmo11g00859 | 271 | PRINTS | CCAAT-binding transcription factor subunit B signature | 206 | 229 | IPR001289 | GO:0003700|GO:0006355 | |
Cmo11g00859 | 271 | ProSiteProfiles | NF-YA/HAP2 family profile. | 172 | 232 | IPR001289 | GO:0003700|GO:0006355 | |
Cmo11g00859 | 271 | MobiDBLite | consensus disorder prediction | 253 | 271 | - | - | |
Cmo11g00859 | 271 | MobiDBLite | consensus disorder prediction | 42 | 72 | - | - | |
Cmo11g00859 | 271 | MobiDBLite | consensus disorder prediction | 207 | 226 | - | - | |
Cmo11g00859 | 271 | MobiDBLite | consensus disorder prediction | 83 | 97 | - | - | |
Cmo11g00859 | 271 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cmo11g00859 | 271 | Gene3D | - | 172 | 234 | - | - | |
Cmo11g00859 | 271 | MobiDBLite | consensus disorder prediction | 227 | 252 | - | - | |
Cmo11g00859 | 271 | SMART | cbf3 | 171 | 232 | IPR001289 | GO:0003700|GO:0006355 | |
Cmo11g00859 | 271 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 34 | 259 | IPR001289 | GO:0003700|GO:0006355 | |
Cmo11g00859 | 271 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 175 | 229 | IPR001289 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g00859 | Cmo20g00092 | CCT | |
Cmo02g01293 | Cmo11g00859 | CCT | |
Cmo11g00859 | Cmo20g00092 | ECH | |
Cmo02g01293 | Cmo11g00859 | ECH | |
Cmo10g00972 | Cmo11g00859 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00517 | Cmo-Chr8:3225088 | Cmo11g00859 | Cmo-Chr11:4378215 | 7.38E-39 | dispersed | |
Cmo11g00859 | Cmo-Chr11:4378215 | Cmo17g00931 | Cmo-Chr17:8289609 | 4.69E-50 | dispersed | |
Cmo10g00972 | Cmo-Chr10:4904211 | Cmo11g00859 | Cmo-Chr11:4378215 | 2.79E-160 | wgd | |
Cmo11g00859 | Cmo-Chr11:4378215 | Cmo02g01293 | Cmo-Chr2:7695004 | 1.53E-101 | wgd | |
Cmo11g00859 | Cmo-Chr11:4378215 | Cmo20g00092 | Cmo-Chr20:465885 | 4.91E-96 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10583 | PF02045 | CBFB_NFYA | 1.00E-25 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g00859 | K08064 | - | csv:101212860 | 459.529 |