Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00859 ATGCAGTCGAAATCCGAAACCAATAATCAGTTTGAATCCGATCCAAACGGTACTCCATCCACGAGTATCTATTACGAACCCTGGTGGCGTGGTATTGGATACAACCCTATTCCGCTACCTATGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAACGATGGCCAGTCGGTGTCTAATAATGACGTCAATGATGAAGAAGATGTTTCCAAAGAAGTTCAAGCTACTGGATCTCCACATTCTGCTGGAAATTACAGACAGGCTGCTCAGAAGATGCAGCATGTTTCATCTACTTTTCCAGTAATGCATGGTGAATGTCTGATGCAGTCGACACAACTCGAACTTGTAGGCCACTCTATTGCATGTGCGTCAAATCCATATCAGGATCCATCTTATGGCGGAATGATGGCTTTTTATGGCCATCAGCCCTTGGGCTATCCTATGGTCGGAATGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTATTGGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGAGAAGGCAAGCGCGTGCAAAAGCCGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGCCATATCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACAAGGGGTAGCGGAGGGCGTTTCACCAAGAAAAACGAAGCTGATGATGGAAAGGAGATGCATTCTGATGAAGTAAATGAGAATGGTCGCCATCTAAATGACGGTTCTAAGCAGCAGAATGGAAGCTCCTTGACGAACATGGCCTCTGATTAG 816 46.08 MQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKPYLHESRHQHAIRRTRGSGGRFTKKNEADDGKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASD 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4378215 4382536 + CmoCh11G008590.1 Cmo11g00859 391478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00859 271 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 34 259 - -
Cmo11g00859 271 MobiDBLite consensus disorder prediction 195 271 - -
Cmo11g00859 271 MobiDBLite consensus disorder prediction 39 97 - -
Cmo11g00859 271 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
Cmo11g00859 271 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Cmo11g00859 271 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Cmo11g00859 271 MobiDBLite consensus disorder prediction 253 271 - -
Cmo11g00859 271 MobiDBLite consensus disorder prediction 42 72 - -
Cmo11g00859 271 MobiDBLite consensus disorder prediction 207 226 - -
Cmo11g00859 271 MobiDBLite consensus disorder prediction 83 97 - -
Cmo11g00859 271 MobiDBLite consensus disorder prediction 1 22 - -
Cmo11g00859 271 Gene3D - 172 234 - -
Cmo11g00859 271 MobiDBLite consensus disorder prediction 227 252 - -
Cmo11g00859 271 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Cmo11g00859 271 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 259 IPR001289 GO:0003700|GO:0006355
Cmo11g00859 271 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 229 IPR001289 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00859 Cmo20g00092 CCT
Cmo02g01293 Cmo11g00859 CCT
Cmo11g00859 Cmo20g00092 ECH
Cmo02g01293 Cmo11g00859 ECH
Cmo10g00972 Cmo11g00859 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00517 Cmo-Chr8:3225088 Cmo11g00859 Cmo-Chr11:4378215 7.38E-39 dispersed
Cmo11g00859 Cmo-Chr11:4378215 Cmo17g00931 Cmo-Chr17:8289609 4.69E-50 dispersed
Cmo10g00972 Cmo-Chr10:4904211 Cmo11g00859 Cmo-Chr11:4378215 2.79E-160 wgd
Cmo11g00859 Cmo-Chr11:4378215 Cmo02g01293 Cmo-Chr2:7695004 1.53E-101 wgd
Cmo11g00859 Cmo-Chr11:4378215 Cmo20g00092 Cmo-Chr20:465885 4.91E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10583 PF02045 CBFB_NFYA 1.00E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00859 K08064 - csv:101212860 459.529