Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00876 ATGTTTCAAGATGAAGGCACATCCTCCATAACTTCTTCCCCTCTCCAGTTCTTCACAATGATGTCTCTTTCACCTAAACTGGGCTCTCCATATCCATGGCTTAGAGAGCTCAAATCGGAGGAGAGGGGCTTGTATTTGATCCATTTGTTGCTTACTTGTGCTAACCATGTGGCTGTTGGTAGTCTTGACAATGCTAATCTTGCTCTTGATCAGATATCCCATCTTGCTTCTGCTGATGGCGATACAATGCAGCGGATAGCAGCGTATTTCGCCGAGGCTCTTGCCAATCGAATCCTTAAAACTTGGCCTGGCCTTTATAAGGCCTTTAACTCCACAAAGATACCTGTGGTTTCAGAGGAGATTCTTGTTAAAAAGCTGTTTTTTGAGGTGTTTCCATTCCTTAAGGTGGCTATTGTGCTTACTAATCAGGCTATTGTTGAAGCCATGGAAGGGGAAAAGATGATTCATATCATTGATCTCGATGCCAATGAAACTGCTCAATGGCTTGCACTTTTGCAGGTTTTGAGTGTCAGGCCTGAAGGGCCTCCCCATTTGAGAATCACTGGGGTTCATCAACAGAAACAGGTTCTGGATCGAATGGCTCGTCAGCTAACTGAAGAAGCTGAAAAGTTTGATATACCGTTTCGATTCGATTCGGTCGTCTGCCGATTAGAGGATCTTGATATGGAAAAGCTTCGTGTGAAAACAGGGGAGGCTCTGGCTATCAGCTCAGTTCTTCAGTTGCATACCCTTTTGGCAGCTGATAATGAAGTCCTGCAAAAGTCATCTCCATTAGCAGGAAAGAGTGCCAATGGAGTTCATTACTCGAGATACCAGCACCCGAACCAAACCAACTTGAGTGAGTTACTCGAAAAGGATTCGGTTAACGGGTGCAGTCCGAGTCCCGATTCGGTATCTTCATCAGCTTTATCTCAAGCCAACGTGACGAAGATCGACAGCTTCTTGAATGGATTGTGGAGTTTGACGCCGAAGGTGATGGTCGTAACCGAACAAGATTCTAACCATAATGGTGCAACACTTATGGAGAGATCACTAGAGGCTCTCCACACATATGCAGCAATCTTTGATTGCTTGGAATCTAATATGTCAAGAACATCCCTAGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGGGAAGAGATTAAGAACATTATAGCTTGTGAGGGAGGTGAAAGGAAGGAACGACACGAGAAGCGTGAGAAATGGAGTCAACGGTTCGATCTCGCGGGGTTCAGGCATGTGCCTTTGAGTTATTATGGCATGCTGCAGGCAAGGAGCCTGCTGCAGGGGTATGGTTGTGATGGTTATAGGCTGAAGGAAGAGAATGGTTGTGTTATGATTTGTTGGCAAGATCGTTCGTTGTTCTCGGTATCGGCTTGGAGGTGTTGTAAGTAG 1416 45.27 MFQDEGTSSITSSPLQFFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDNANLALDQISHLASADGDTMQRIAAYFAEALANRILKTWPGLYKAFNSTKIPVVSEEILVKKLFFEVFPFLKVAIVLTNQAIVEAMEGEKMIHIIDLDANETAQWLALLQVLSVRPEGPPHLRITGVHQQKQVLDRMARQLTEEAEKFDIPFRFDSVVCRLEDLDMEKLRVKTGEALAISSVLQLHTLLAADNEVLQKSSPLAGKSANGVHYSRYQHPNQTNLSELLEKDSVNGCSPSPDSVSSSALSQANVTKIDSFLNGLWSLTPKVMVVTEQDSNHNGATLMERSLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGGERKERHEKREKWSQRFDLAGFRHVPLSYYGMLQARSLLQGYGCDGYRLKEENGCVMICWQDRSLFSVSAWRCCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4488666 4490081 - CmoCh11G008760.1 Cmo11g00876 391495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00876 471 Pfam GRAS domain family 46 468 IPR005202 -
Cmo11g00876 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 470 IPR005202 -
Cmo11g00876 471 PANTHER SCARECROW-LIKE PROTEIN 3 2 470 IPR030008 GO:0003700|GO:0005634|GO:0009739
Cmo11g00876 471 ProSiteProfiles GRAS family profile. 37 468 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00876 - - - csv:101215435 819.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00876 Cmo-Chr11:4488666 Cmo18g00884 Cmo-Chr18:10104659 0 dispersed
Cmo11g00876 Cmo-Chr11:4488666 Cmo16g00983 Cmo-Chr16:6731154 4.23E-60 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g00135 CST 77 758 GRAS Transcription Factor Family AT2G37650 53.5 2.9e-194 676.0
Cmo06g00292 CST 76 757 GRAS Transcription Factor Family AT2G37650 52.8 1.9e-193 673.3
Cmo08g00832 . 336 699 GRAS Transcription Factor Family AT2G45160 55.9 1.5e-104 377.9
Cmo13g00114 . 212 670 GRAS Transcription Factor Family AT3G46600 52.1 3.6e-131 466.1
Cmo01g00641 . 233 686 GRAS Transcription Factor Family AT3G46600 51.0 2.1e-126 450.3
Cmo07g00670 . 37 435 GRAS Transcription Factor Family AT3G49950 59.1 2.1e-128 456.4
Cmo04g00829 . 69 534 GRAS Transcription Factor Family AT4G36710 52.7 4.9e-124 442.2
Cmo04g00661 . 49 438 GRAS Transcription Factor Family AT5G41920 69.1 3.5e-147 518.8
Cmo07g01227 CST 441 835 GRAS Transcription Factor Family AT5G41920 56.3 5.7e-118 421.8
Cmo03g00275 CST 435 828 GRAS Transcription Factor Family AT5G41920 55.4 1.0e-114 411.0
Cmo07g00492 CCT,CST 1 596 GRAS Transcription Factor Family AT5G66770 57.5 4.3e-175 612.1
Cmo03g00782 CCT,CST 1 614 GRAS Transcription Factor Family AT5G66770 56.3 1.3e-174 610.5
Cmo16g00713 CCT,CST 1 591 GRAS Transcription Factor Family AT5G66770 57.9 8.1e-174 607.8
Cmo04g00840 CCT,CST 1 606 GRAS Transcription Factor Family AT5G66770 57.1 1.7e-171 600.1
Cmo20g00673 CST 21 538 GRAS Transcription Factor Family AT1G50600 56.5 9.9e-163 570.9
Cmo02g00224 CST 57 535 GRAS Transcription Factor Family AT1G50600 58.8 6.4e-162 568.2
Cmo16g00983 . 45 543 GRAS Transcription Factor Family AT1G50600 57.5 3.3e-158 555.8
Cmo06g00666 . 1 525 GRAS Transcription Factor Family AT1G50600 54.3 4.8e-157 552.0
Cmo03g00608 . 111 549 GRAS Transcription Factor Family AT1G50600 56.6 1.0e-138 491.1
Cmo09g00910 CST 115 576 GRAS Transcription Factor Family AT1G50600 54.1 2.3e-135 479.9
Cmo01g01214 CST 194 581 GRAS Transcription Factor Family AT1G50600 58.1 2.8e-133 473.0
Cmo07g00344 . 111 549 GRAS Transcription Factor Family AT1G50600 54.5 4.8e-133 472.2
Cmo01g01045 . 195 576 GRAS Transcription Factor Family AT1G50600 51.0 2.2e-109 393.7
Cmo16g01047 . 1 626 GRAS Transcription Factor Family AT1G63100 50.3 1.2e-160 564.3
Cmo04g02220 . 44 581 GRAS Transcription Factor Family AT1G14920 67.1 1.6e-205 713.0
Cmo15g01000 . 44 575 GRAS Transcription Factor Family AT1G14920 66.4 8.4e-202 700.7
Cmo15g00767 . 49 594 GRAS Transcription Factor Family AT1G14920 62.1 3.9e-183 638.6
Cmo04g02397 . 56 613 GRAS Transcription Factor Family AT1G14920 58.0 4.7e-176 615.1
Cmo01g00394 . 32 542 GRAS Transcription Factor Family AT1G14920 55.9 2.6e-150 529.6
Cmo14g00833 . 28 533 GRAS Transcription Factor Family AT1G14920 53.1 5.6e-145 511.9
Cmo04g02397 . 35 614 GRAS Transcription Factor Family AT1G66350 58.1 9.6e-179 624.0
Cmo15g00767 . 49 591 GRAS Transcription Factor Family AT1G66350 61.3 1.2e-176 617.1
Cmo04g02220 . 1 579 GRAS Transcription Factor Family AT1G66350 56.2 8.7e-172 600.9
Cmo15g01000 . 44 571 GRAS Transcription Factor Family AT1G66350 58.8 1.0e-167 587.4
Cmo01g00394 . 1 540 GRAS Transcription Factor Family AT1G66350 56.6 1.4e-156 550.4
Cmo14g00833 . 1 533 GRAS Transcription Factor Family AT1G66350 54.0 6.5e-151 531.6
Cmo02g00224 CST 19 535 GRAS Transcription Factor Family AT5G48150 65.6 2.8e-191 665.6
Cmo20g00673 CST 19 538 GRAS Transcription Factor Family AT5G48150 64.4 2.0e-189 659.4
Cmo16g00983 . 17 543 GRAS Transcription Factor Family AT5G48150 57.9 1.4e-171 600.1
Cmo06g00666 . 17 525 GRAS Transcription Factor Family AT5G48150 59.7 1.7e-169 593.2
Cmo03g00608 . 16 549 GRAS Transcription Factor Family AT5G48150 51.3 8.4e-148 521.2
Cmo07g00344 . 16 549 GRAS Transcription Factor Family AT5G48150 51.3 3.3e-144 509.2
Cmo01g01214 CST 93 581 GRAS Transcription Factor Family AT5G48150 51.4 1.9e-136 483.4
Cmo09g00910 CST 206 577 GRAS Transcription Factor Family AT5G48150 61.9 1.4e-134 477.2
Cmo04g02220 . 46 578 GRAS Transcription Factor Family AT2G01570 68.9 4.4e-212 734.9
Cmo15g01000 . 46 571 GRAS Transcription Factor Family AT2G01570 68.3 3.6e-206 715.3
Cmo15g00767 . 50 592 GRAS Transcription Factor Family AT2G01570 61.7 1.1e-183 640.6
Cmo04g02397 . 60 610 GRAS Transcription Factor Family AT2G01570 60.8 1.5e-180 630.2
Cmo01g00394 . 32 542 GRAS Transcription Factor Family AT2G01570 57.3 2.3e-152 536.6
Cmo14g00833 . 27 537 GRAS Transcription Factor Family AT2G01570 51.6 1.5e-146 517.3
Cmo04g02397 . 35 614 GRAS Transcription Factor Family AT1G66350 58.1 9.6e-179 624.0
Cmo15g00767 . 49 591 GRAS Transcription Factor Family AT1G66350 61.3 1.2e-176 617.1
Cmo04g02220 . 1 579 GRAS Transcription Factor Family AT1G66350 56.2 8.7e-172 600.9
Cmo15g01000 . 44 571 GRAS Transcription Factor Family AT1G66350 58.8 1.0e-167 587.4
Cmo01g00394 . 1 540 GRAS Transcription Factor Family AT1G66350 56.6 1.4e-156 550.4
Cmo14g00833 . 1 533 GRAS Transcription Factor Family AT1G66350 54.0 6.5e-151 531.6
Cmo15g00767 . 50 592 GRAS Transcription Factor Family AT3G03450 61.7 3.3e-177 619.0
Cmo04g02397 . 60 610 GRAS Transcription Factor Family AT3G03450 59.1 7.1e-172 601.3
Cmo04g02220 . 46 578 GRAS Transcription Factor Family AT3G03450 60.1 1.3e-170 597.0
Cmo15g01000 . 46 571 GRAS Transcription Factor Family AT3G03450 61.1 3.0e-170 595.9
Cmo01g00394 . 32 541 GRAS Transcription Factor Family AT3G03450 58.1 8.8e-154 541.2
Cmo14g00833 . 27 533 GRAS Transcription Factor Family AT3G03450 56.0 2.0e-153 540.0
Cmo04g02397 . 46 613 GRAS Transcription Factor Family AT5G17490 55.0 2.5e-158 556.2
Cmo15g00767 . 49 592 GRAS Transcription Factor Family AT5G17490 55.9 1.8e-156 550.1
Cmo04g02220 . 42 578 GRAS Transcription Factor Family AT5G17490 56.3 7.6e-155 544.7
Cmo15g01000 . 42 571 GRAS Transcription Factor Family AT5G17490 57.0 1.2e-152 537.3
Cmo01g00394 . 33 542 GRAS Transcription Factor Family AT5G17490 54.8 3.1e-140 496.1
Cmo14g00833 . 23 531 GRAS Transcription Factor Family AT5G17490 51.8 5.1e-135 478.8
Cmo01g01045 . 1 576 GRAS Transcription Factor Family AT1G21450 57.5 1.7e-174 610.1
Cmo01g01214 CST 213 581 GRAS Transcription Factor Family AT1G21450 50.5 3.3e-106 383.3
Cmo01g00641 . 312 686 GRAS Transcription Factor Family AT5G59450 55.9 2.7e-127 453.4
Cmo06g00292 CST 306 757 GRAS Transcription Factor Family AT5G59450 50.1 3.6e-124 443.0
Cmo07g00344 . 1 549 GRAS Transcription Factor Family AT4G17230 57.6 8.2e-173 604.4
Cmo03g00608 . 32 549 GRAS Transcription Factor Family AT4G17230 61.0 1.1e-172 604.0
Cmo16g00983 . 49 543 GRAS Transcription Factor Family AT4G17230 51.8 4.4e-134 475.7
Cmo06g00666 . 45 534 GRAS Transcription Factor Family AT4G17230 50.3 1.1e-129 461.1
Cmo01g01214 CST 211 581 GRAS Transcription Factor Family AT4G17230 53.6 1.6e-112 404.1
Cmo09g00910 CST 203 576 GRAS Transcription Factor Family AT4G17230 52.7 3.1e-111 399.8
Cmo02g00224 CST 124 535 GRAS Transcription Factor Family AT2G04890 66.3 1.1e-159 560.5
Cmo20g00673 CST 127 538 GRAS Transcription Factor Family AT2G04890 65.2 4.9e-157 551.6
Cmo16g00983 . 165 543 GRAS Transcription Factor Family AT2G04890 63.1 1.5e-142 503.4
Cmo06g00666 . 153 525 GRAS Transcription Factor Family AT2G04890 64.3 2.0e-142 503.1
Cmo01g01214 CST 208 581 GRAS Transcription Factor Family AT2G04890 58.8 3.8e-125 445.7
Cmo09g00910 CST 200 577 GRAS Transcription Factor Family AT2G04890 57.4 4.9e-125 445.3
Cmo03g00608 . 169 549 GRAS Transcription Factor Family AT2G04890 59.1 7.1e-124 441.4
Cmo07g00344 . 170 549 GRAS Transcription Factor Family AT2G04890 56.6 9.0e-119 424.5
Cmo11g00876 . 1 471 GRAS Transcription Factor Family AT1G50420 67.4 2.9e-177 619.0
Cmo18g00884 . 1 464 GRAS Transcription Factor Family AT1G50420 61.8 5.7e-157 551.6
Cmo06g00799 CCT,CST 415 777 GRAS Transcription Factor Family AT4G00150 55.6 2.5e-103 373.6
Cmo16g01195 CST 367 729 GRAS Transcription Factor Family AT4G00150 53.8 1.4e-101 367.9
Cmo07g00492 CCT,CST 1 596 GRAS Transcription Factor Family AT3G50650 53.4 3.4e-150 529.3
Cmo16g00713 CCT,CST 1 591 GRAS Transcription Factor Family AT3G50650 51.2 7.1e-148 521.5
Cmo07g01227 CST 185 833 GRAS Transcription Factor Family AT3G54220 60.9 2.0e-205 713.0
Cmo03g00275 CST 175 826 GRAS Transcription Factor Family AT3G54220 61.2 3.4e-205 712.2
Cmo04g00661 . 68 436 GRAS Transcription Factor Family AT3G54220 64.5 9.8e-136 481.5
Cmo07g00661 . 92 492 GRAS Transcription Factor Family AT4G37650 65.1 1.7e-154 543.5
Cmo02g00551 . 102 477 GRAS Transcription Factor Family AT4G37650 57.4 4.9e-125 445.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002014 2 5 1 2 2 2 3 2 2 1 2 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 2 3 2 0 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10585 PF03514 GRAS 2.30E-138 CL0063 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00876 Cmo_Chr11 FPKM 0.0 0.0 0.0 0.0 0.08484 0.0 0.053238 0.0 0.016099 0.0