Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00876 ATGTTTCAAGATGAAGGCACATCCTCCATAACTTCTTCCCCTCTCCAGTTCTTCACAATGATGTCTCTTTCACCTAAACTGGGCTCTCCATATCCATGGCTTAGAGAGCTCAAATCGGAGGAGAGGGGCTTGTATTTGATCCATTTGTTGCTTACTTGTGCTAACCATGTGGCTGTTGGTAGTCTTGACAATGCTAATCTTGCTCTTGATCAGATATCCCATCTTGCTTCTGCTGATGGCGATACAATGCAGCGGATAGCAGCGTATTTCGCCGAGGCTCTTGCCAATCGAATCCTTAAAACTTGGCCTGGCCTTTATAAGGCCTTTAACTCCACAAAGATACCTGTGGTTTCAGAGGAGATTCTTGTTAAAAAGCTGTTTTTTGAGGTGTTTCCATTCCTTAAGGTGGCTATTGTGCTTACTAATCAGGCTATTGTTGAAGCCATGGAAGGGGAAAAGATGATTCATATCATTGATCTCGATGCCAATGAAACTGCTCAATGGCTTGCACTTTTGCAGGTTTTGAGTGTCAGGCCTGAAGGGCCTCCCCATTTGAGAATCACTGGGGTTCATCAACAGAAACAGGTTCTGGATCGAATGGCTCGTCAGCTAACTGAAGAAGCTGAAAAGTTTGATATACCGTTTCGATTCGATTCGGTCGTCTGCCGATTAGAGGATCTTGATATGGAAAAGCTTCGTGTGAAAACAGGGGAGGCTCTGGCTATCAGCTCAGTTCTTCAGTTGCATACCCTTTTGGCAGCTGATAATGAAGTCCTGCAAAAGTCATCTCCATTAGCAGGAAAGAGTGCCAATGGAGTTCATTACTCGAGATACCAGCACCCGAACCAAACCAACTTGAGTGAGTTACTCGAAAAGGATTCGGTTAACGGGTGCAGTCCGAGTCCCGATTCGGTATCTTCATCAGCTTTATCTCAAGCCAACGTGACGAAGATCGACAGCTTCTTGAATGGATTGTGGAGTTTGACGCCGAAGGTGATGGTCGTAACCGAACAAGATTCTAACCATAATGGTGCAACACTTATGGAGAGATCACTAGAGGCTCTCCACACATATGCAGCAATCTTTGATTGCTTGGAATCTAATATGTCAAGAACATCCCTAGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGGGAAGAGATTAAGAACATTATAGCTTGTGAGGGAGGTGAAAGGAAGGAACGACACGAGAAGCGTGAGAAATGGAGTCAACGGTTCGATCTCGCGGGGTTCAGGCATGTGCCTTTGAGTTATTATGGCATGCTGCAGGCAAGGAGCCTGCTGCAGGGGTATGGTTGTGATGGTTATAGGCTGAAGGAAGAGAATGGTTGTGTTATGATTTGTTGGCAAGATCGTTCGTTGTTCTCGGTATCGGCTTGGAGGTGTTGTAAGTAG 1416 45.27 MFQDEGTSSITSSPLQFFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDNANLALDQISHLASADGDTMQRIAAYFAEALANRILKTWPGLYKAFNSTKIPVVSEEILVKKLFFEVFPFLKVAIVLTNQAIVEAMEGEKMIHIIDLDANETAQWLALLQVLSVRPEGPPHLRITGVHQQKQVLDRMARQLTEEAEKFDIPFRFDSVVCRLEDLDMEKLRVKTGEALAISSVLQLHTLLAADNEVLQKSSPLAGKSANGVHYSRYQHPNQTNLSELLEKDSVNGCSPSPDSVSSSALSQANVTKIDSFLNGLWSLTPKVMVVTEQDSNHNGATLMERSLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGGERKERHEKREKWSQRFDLAGFRHVPLSYYGMLQARSLLQGYGCDGYRLKEENGCVMICWQDRSLFSVSAWRCCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4488666 4490081 - CmoCh11G008760.1 Cmo11g00876 391495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00876 471 Pfam GRAS domain family 46 468 IPR005202 -
Cmo11g00876 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 470 IPR005202 -
Cmo11g00876 471 PANTHER SCARECROW-LIKE PROTEIN 3 2 470 IPR030008 GO:0003700|GO:0005634|GO:0009739
Cmo11g00876 471 ProSiteProfiles GRAS family profile. 37 468 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00876 Cmo-Chr11:4488666 Cmo18g00884 Cmo-Chr18:10104659 0 dispersed
Cmo11g00876 Cmo-Chr11:4488666 Cmo16g00983 Cmo-Chr16:6731154 4.23E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10585 PF03514 GRAS 2.30E-138 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00876 - - csv:101215435 819.69