Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00893 ATGTGGCCCTCCACCTCCTCCACCAGACCTATTGCCGGTGCGTATGGCCACACGGCACCACCGCCGACGGACATGGTGGGTCTCATGGCCTCTGGCTATGGAGTTGGCCTTAGTGTTTTGCCTCTTCTTACTGGTCTTGCGCCGTCGAGTGTCGGAATTGAAGAGACTAATTTGATGATCAGCCGCGGCGGCGATGGCGGCGGCGGAGGTGGTGGGGTTCAATTTCATGGGAATAATTTTGATGGGTTTGGGTTTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGTTGGGACTTGCCATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGTTTTGACTGTGCTACTCACGTGAAGAGCACGTGGGTTCCAGCAGCCCGGCGGAGAGAACGCCAAGTACTGAGCGCCGCCGCCGCCGCCGCCGCCACTGGTGGGACTTCATCGGGATCCACCTCCGGCGGGAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGACACTTGCTCAGCTGCAGATATGAGTTATAAAAGGGCGAAAAAGCTGCCGGAACAAGTAAGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTACCGGCGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAAGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCAACATCGTCACCGATCATCGACCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGAGTTCCGGCTATGGTAATCCAATAAATTGA 942 55.94 MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4577275 4578948 + CmoCh11G008930.1 Cmo11g00893 391512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00893 313 MobiDBLite consensus disorder prediction 275 313 - -
Cmo11g00893 313 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 98 140 IPR006510 -
Cmo11g00893 313 MobiDBLite consensus disorder prediction 153 192 - -
Cmo11g00893 313 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 87 313 - -
Cmo11g00893 313 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 87 313 IPR007818 GO:0003700|GO:0006355
Cmo11g00893 313 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 208 258 IPR006511 -
Cmo11g00893 313 MobiDBLite consensus disorder prediction 149 192 - -
Cmo11g00893 313 Pfam Domain of unknown function (DUF702) 98 259 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00893 Cmo20g00116 CCT
Cmo02g01315 Cmo11g00893 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00893 Cmo-Chr11:4577275 Cmo18g00864 Cmo-Chr18:9957782 1.26E-52 dispersed
Cmo11g00893 Cmo-Chr11:4577275 Cmo02g01315 Cmo-Chr2:7811668 3.78E-67 wgd
Cmo11g00893 Cmo-Chr11:4577275 Cmo20g00116 Cmo-Chr20:589618 1.14E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10586 PF05142 DUF702 2.80E-57 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00893 - - cmax:111472747 528.48