Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00932 ATGTTCGGAAGAGCTTCGAAGAAGAGCGACAGCATGCGGTACTATGAGATCCTTGGAGTGTCCAAGAACGCGTCGCAGGATGATTTGAAGAAGGCCTACAAGAAGGCCGCCATCAAGAATCATCCTGATAAGGGCGGTGATCCGGAGAAGTTTAAAGAGTTGGCTCAAGCTTATGAGGTTCTTAGCAATCCCGAGAAGCGAGAGATTTATGATCAGTATGGGGAGGACGCACTTAAAGAAGGAATGGGCGGTGGAGGTGGTCATGACCCCTTCGATATCTTCCAATCCTTCTTTGGCGGAAGCCCATTCGGGGGTGGTGGTAGCAGCAGGGGCAGACGCCAGAGACGGGGAGAGGATGTGGTAAAACCCCTTAAGGTCTCCCTTGAGGATCTCTACCTTGGAACTACTAAGAAACTCTCTCTATCCAGAAATGTTCTCTGCTCCAAATGCAAAGGTAAGGGATCAAAATCTGGCGATTCAACGAACTGTTCTGGCTGCCAAGGAACTGGAATGAAGGTAACAATCAGGCACCTCGGGCCTTCGATGATCCAGCAGATGCAGCAGCCTTGCAATGAATGCAAGGGTACTGGAGAAACAATCAGCGACAAGGACCGGTGTCCGCAGTGCAAGGGAGAGAAAGTTGTACAAGAAAAGAAGGTTTTGGAAGTGATTGTAGAGAAGGGTATGCAGAATGGACAGAAGATTAAATTCCCAGGAGAAGCCGATGAAGCTCCTGATTCTGTCACTGGAGATGTAGTTTTTGTTATTCAGCAAAAGGATCACCCAAAATTCAAGAGGAAGGGAGATGATTTGTTTGTGGAGCACACTCTGTCGCTCATTGAAGCGCTCGGTGGCTTCCAGTTTGCGCTCACGCACTTGGATGGCAGGCAGCTGCTCATCAAAACAAACCCTGGAGAAGTTGTAAAGCCTGATTCATTCAAGGCCATTAACGACGAGGGAATGCCAGTGTACCAGAGGCCATTCATGAAAGGGAAGCTCTACATCCATTTCAGTGTAGACTTCCCGGAGTCGTTGAGCGCAGAGCAGATGAAAGCTCTGGAAACTGTGTTGCCATCAAAACCATCATCATCCAAGCTGACGGACATGGAGGTGGATGAATGTGAGGAGACGACCATGCACGACGTCAACATTGAAGAGGAGATGCGGAGGAAGCAGCATCAGGCGCAAGGCGAAGCCCACGAAGAAGATGAAGACATGCACGGCGGCGGGCCTCAGCGAGTGCAGTGTGCCCAGCATTTTCTTCTTTCTTCATCGTCACCCATTTCCCTTCAGATCGGCCCTTCAACGCCGATCATCCACGAGATTATGGACGGGCGAATGTTCAGTCGCATCCTCTTTCTTCTCTTCGCGGTTCATTTACTCTTGCCTGCCATCTTCGCTGCCAAATTCGACTATTGCGACAAGAGAGGTAATTATCCTGTGAAGGTCGATGGACTTAAAGTATCTCCTTATCCAGTGAAGGGTGGGAAGCCTGCCACGTTTGCCGTTTCAGCCTCTACTGAGAAAAATCTGTCCGGTGGAAAGTTCGAGGTCGAGGTTTCTTTATTTGGCGTGCGTATACATTCCGAAAGTCATGATCTTTGTGAAGCAACTTCTTGTCCTGTTAAACCTGGAAAATTCTCGTTATCCCACTCTCAAAGCTTACCTCCATTTACGCCACCAGGTATGTATTCTGTGAAAATAATATTGAAAGATACGGATAAGGAGCAGTTGACTTGCATCAGCTTCAAGCTCAAAATTGTTTTTGGTGACGAGAAATCAGCAATACCTGAAGAATCCTTGGTTGCTGAGAGTTGA 1818 48.29 MFGRASKKSDSMRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSNPEKREIYDQYGEDALKEGMGGGGGHDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVVKPLKVSLEDLYLGTTKKLSLSRNVLCSKCKGKGSKSGDSTNCSGCQGTGMKVTIRHLGPSMIQQMQQPCNECKGTGETISDKDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKIKFPGEADEAPDSVTGDVVFVIQQKDHPKFKRKGDDLFVEHTLSLIEALGGFQFALTHLDGRQLLIKTNPGEVVKPDSFKAINDEGMPVYQRPFMKGKLYIHFSVDFPESLSAEQMKALETVLPSKPSSSKLTDMEVDECEETTMHDVNIEEEMRRKQHQAQGEAHEEDEDMHGGGPQRVQCAQHFLLSSSSPISLQIGPSTPIIHEIMDGRMFSRILFLLFAVHLLLPAIFAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVSASTEKNLSGGKFEVEVSLFGVRIHSESHDLCEATSCPVKPGKFSLSHSQSLPPFTPPGMYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4842388 4848535 - CmoCh11G009320.1 Cmo11g00932 391551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00932 605 CDD DnaJ_C 118 345 - -
Cmo11g00932 605 CDD DnaJ 14 63 IPR001623 -
Cmo11g00932 605 Gene3D - 468 589 - -
Cmo11g00932 605 SMART pgtp_13 470 585 IPR003172 -
Cmo11g00932 605 Pfam DnaJ central domain 147 213 IPR001305 GO:0031072|GO:0051082
Cmo11g00932 605 PANTHER DNAJ PROTEIN HOMOLOG 7 418 - -
Cmo11g00932 605 Pfam DnaJ domain 14 71 IPR001623 -
Cmo11g00932 605 Gene3D DnaJ domain 11 108 IPR036869 -
Cmo11g00932 605 SUPERFAMILY E set domains 468 588 IPR014756 -
Cmo11g00932 605 Gene3D - 147 213 - -
Cmo11g00932 605 ProSiteProfiles Zinc finger CR-type profile. 134 218 IPR001305 GO:0031072|GO:0051082
Cmo11g00932 605 SMART dnaj_3 12 66 IPR001623 -
Cmo11g00932 605 Pfam ML domain 469 587 IPR003172 -
Cmo11g00932 605 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 353 IPR008971 GO:0006457|GO:0051082
Cmo11g00932 605 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Cmo11g00932 605 Gene3D - 109 259 - -
Cmo11g00932 605 Hamap Chaperone protein DnaJ [dnaJ]. 10 369 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cmo11g00932 605 CDD PG-PI_TP 470 584 IPR033917 GO:0032366
Cmo11g00932 605 MobiDBLite consensus disorder prediction 390 409 - -
Cmo11g00932 605 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 418 IPR044713 GO:0006457|GO:0030544
Cmo11g00932 605 CDD DnaJ_zf 147 213 IPR001305 GO:0031072|GO:0051082
Cmo11g00932 605 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Cmo11g00932 605 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 144 216 IPR036410 -
Cmo11g00932 605 Gene3D - 261 343 - -
Cmo11g00932 605 SUPERFAMILY Chaperone J-domain 8 107 IPR036869 -
Cmo11g00932 605 PRINTS DnaJ domain signature 15 33 IPR001623 -
Cmo11g00932 605 PRINTS DnaJ domain signature 66 85 IPR001623 -
Cmo11g00932 605 PRINTS DnaJ domain signature 46 66 IPR001623 -
Cmo11g00932 605 Pfam DnaJ C terminal domain 122 342 IPR002939 -
Cmo11g00932 605 SUPERFAMILY HSP40/DnaJ peptide-binding domain 118 262 IPR008971 GO:0006457|GO:0051082
Cmo11g00932 605 MobiDBLite consensus disorder prediction 390 410 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00932 Cmo20g00331 CCT
Cmo02g00692 Cmo11g00932 CCT
Cmo01g00764 Cmo11g00932 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00538 Cmo-Chr6:2593968 Cmo11g00932 Cmo-Chr11:4842388 1.34E-20 dispersed
Cmo11g00932 Cmo-Chr11:4842388 Cmo18g00963 Cmo-Chr18:10696618 0 dispersed
Cmo14g00370 Cmo-Chr14:1711071 Cmo11g00932 Cmo-Chr11:4842388 5.02E-24 dispersed
Cmo10g00894 Cmo-Chr10:4370656 Cmo11g00932 Cmo-Chr11:4842388 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00932 K09503 - csv:101205422 669.463