Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00953 ATGGGGCCTTGCTTGTCTGTTGGATGTAAGAGGGCCATGGCTGGTTCCTCTGTATCTTCTGTGCTGGAAGCAAGAAAACTGAAAGACTCAGAAAATGGGCTGGAGTCCAAGGATTCTATGTTTGAGCAGCAGAGTGAAGAAGCAACAGTTCACCGAATTCCGGGTCGGATGTTCTTGAATGGATCCAGTGAAGTTGCCTCACTTTATACTCAACAGGGCAAGAAAGGGATGAACCAAGATGCCATGATTGTATGGGAGCACTTTGGCTCAAGAACAGATACATTCTTCTGTGGAGTTTTTGATGGCCATGGTCCTAACGGTCATCTGGTTGCGAAAAGAGTGAGGGATTCTCTGCCCCTGAAACTGACTGCACATTGGGAAGCTAATGCAAGCAATGAGGATATTTCAAAAGAGTTTGGTCATAAAACAGGTCTCAACAATGAAAATTCTGGGTTAGAAACTGATTGGAAGGAAGCTAGTTCTCCCCTTAAGCACCATGAAATTTCTGAAAATATGAAGGAATCATTTTTGAAGGCTTTTAAGAGAATGGATGTGGAACTCAAAATGCAGCCAAGTATTGACTGCTTCTGTAGTGGGACAACAGCAGTAGCTCTTGTTAAGCAGGATCGAGATCTTGTTATTGGAAATGTCGGGGACTCTCGAGCTGTGTTGGGTACCAGAGACAAGGATAATTGTCTCCAAGCAGTTCAGTTGACCATAGATCTCAAGCCAGATATTCCAGCGGAAGCAGAGAGAATTCTCCAGTGCAAGGGTCGGGTATTTGCCCATGAGGATGAACCAGAAGTTGCTAGGGTATGGCTTCCAAACAATGATTCCCCTGGGCTGGCAATGGCACGATCTTTCGGCGACTTTTGCCTCAAGGACTTCGGTCTAATTTCTGTTCCTGAAATTTCGTATCGGTTTCTGACGGACGAAGACGAGTTTATAGTTTTAGCTACCGACGGAATTTGGGATGTTCTCTCAAACAAAGAGGTAGTCGACATTGTGGCATCGACCCCAGCTCGTTCTGCAGCTCAATCATTGGTTGAGTCTGCAACTAAAGCATGGAGGCGCAAGTTTCCTTTTTCCAACATTGACGACTGTGCTGTTGTGTGCCTCTTCCTCGACTCGAACTTGATGGTATCAGATATGAATGTTAAATCCCAGGAGGATAGTTCAGCAGTTCAAGCTGAGACAGCCATGGTGGATGATGATGTCTCAGGCGCAGCTGGTCTACGGTGTTCGGAAATCGTGCAAACAGTAGGAGTTTCTACATGA 1278 45.62 MGPCLSVGCKRAMAGSSVSSVLEARKLKDSENGLESKDSMFEQQSEEATVHRIPGRMFLNGSSEVASLYTQQGKKGMNQDAMIVWEHFGSRTDTFFCGVFDGHGPNGHLVAKRVRDSLPLKLTAHWEANASNEDISKEFGHKTGLNNENSGLETDWKEASSPLKHHEISENMKESFLKAFKRMDVELKMQPSIDCFCSGTTAVALVKQDRDLVIGNVGDSRAVLGTRDKDNCLQAVQLTIDLKPDIPAEAERILQCKGRVFAHEDEPEVARVWLPNNDSPGLAMARSFGDFCLKDFGLISVPEISYRFLTDEDEFIVLATDGIWDVLSNKEVVDIVASTPARSAAQSLVESATKAWRRKFPFSNIDDCAVVCLFLDSNLMVSDMNVKSQEDSSAVQAETAMVDDDVSGAAGLRCSEIVQTVGVST 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5012030 5014543 + CmoCh11G009530.1 Cmo11g00953 391572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00953 425 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 388 - -
Cmo11g00953 425 CDD PP2Cc 65 375 IPR001932 -
Cmo11g00953 425 PANTHER ALPHABET, ISOFORM E-RELATED 1 388 - -
Cmo11g00953 425 Gene3D - 60 377 IPR036457 -
Cmo11g00953 425 SMART PP2C_4 57 373 IPR001932 -
Cmo11g00953 425 MobiDBLite consensus disorder prediction 138 164 - -
Cmo11g00953 425 MobiDBLite consensus disorder prediction 28 45 - -
Cmo11g00953 425 MobiDBLite consensus disorder prediction 142 156 - -
Cmo11g00953 425 SUPERFAMILY PP2C-like 63 376 IPR036457 -
Cmo11g00953 425 Pfam Protein phosphatase 2C 120 350 IPR001932 -
Cmo11g00953 425 MobiDBLite consensus disorder prediction 28 47 - -
Cmo11g00953 425 ProSiteProfiles PPM-type phosphatase domain profile. 65 375 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00519 Cmo-Chr1:2498314 Cmo11g00953 Cmo-Chr11:5012030 1.18E-168 dispersed
Cmo08g00081 Cmo-Chr8:420886 Cmo11g00953 Cmo-Chr11:5012030 3.01E-161 dispersed
Cmo11g00953 Cmo-Chr11:5012030 Cmo17g00575 Cmo-Chr17:5906993 8.39E-156 dispersed
Cmo11g00953 Cmo-Chr11:5012030 Cmo05g00859 Cmo-Chr5:5570993 6.28E-174 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00953 - - cmax:111498595 835.869