Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00965 ATGGAATACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCTCTCACGCCGTCCTTGCGCGAAGATGCACTCTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTCTGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACCGCGAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGGCATTTTCTTGGATGCTGCAGTACTACTTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTTCGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGCTCCCCTATTTATCCAACCGTACAATCGCCAACTCCTGGTCAGCAGTCGTATCCAGGAGGAAGCACAAATTGGTCAAGGGCTTCCTTTATTCCTAGTCCACGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATTTTACCTCAAGGAGTTCTCTCTGTTCCAGGCTGGAATACATTCAATGATCAGCTAGGATCAGTTTCATCATCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAATTTTACATGAAGACCGGAGACTGCAAGTTCGGTGCCGTTTGTCGATTTCATCATCCCAGAGAACGAGTAATTCCTGCTCCAGATTGTGTCTTGAGTCCAATTGGCCTACCGTTGCGTCCGGGAGAGCCTTTGTGCATCTTTTATTCGCGTTATGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTCGATCACCCTATGGGAATCTTCGCATACAATCTCTCTGCAGCGTCAACACCGAACGCCCCAGTTCAGCATTTGTTTGGGACGTCATCAGGAACTACTGCACTGAGTTTGTCATCTGAAGGGCTAGTCGAAGCAGGATCTGCAAAGGCGAGACGACTATCAATCACAGAGACACGAGAGATGTCATCTGATGATGAAAACATCGAGGCCGAGGGCTGA 1218 47.21 MEYDSGIPMSVTEGHSSALTPSLREDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQAFSWMLQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNTFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFAYNLSAASTPNAPVQHLFGTSSGTTALSLSSEGLVEAGSAKARRLSITETREMSSDDENIEAEG 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5082995 5088729 + CmoCh11G009650.1 Cmo11g00965 391584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00965 405 MobiDBLite consensus disorder prediction 244 262 - -
Cmo11g00965 405 ProSiteProfiles Zinc finger C3H1-type profile. 145 173 IPR000571 GO:0046872
Cmo11g00965 405 ProSiteProfiles Zinc finger C3H1-type profile. 92 127 IPR000571 GO:0046872
Cmo11g00965 405 PANTHER PROTEIN PHOSPHATASE RELATED 10 257 - -
Cmo11g00965 405 PANTHER PROTEIN PHOSPHATASE RELATED 257 404 - -
Cmo11g00965 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Cmo11g00965 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 126 IPR000571 GO:0046872
Cmo11g00965 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 313 338 IPR000571 GO:0046872
Cmo11g00965 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 172 IPR000571 GO:0046872
Cmo11g00965 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 292 IPR000571 GO:0046872
Cmo11g00965 405 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Cmo11g00965 405 SUPERFAMILY CCCH zinc finger 314 338 IPR036855 GO:0046872
Cmo11g00965 405 SUPERFAMILY CCCH zinc finger 147 173 IPR036855 GO:0046872
Cmo11g00965 405 Gene3D - 255 340 - -
Cmo11g00965 405 Gene3D - 23 82 - -
Cmo11g00965 405 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 10 257 - -
Cmo11g00965 405 MobiDBLite consensus disorder prediction 244 265 - -
Cmo11g00965 405 SMART c3hfinal6 92 126 IPR000571 GO:0046872
Cmo11g00965 405 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Cmo11g00965 405 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Cmo11g00965 405 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Cmo11g00965 405 SMART c3hfinal6 265 292 IPR000571 GO:0046872
Cmo11g00965 405 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Cmo11g00965 405 SUPERFAMILY CCCH zinc finger 52 75 IPR036855 GO:0046872
Cmo11g00965 405 SUPERFAMILY CCCH zinc finger 269 294 IPR036855 GO:0046872
Cmo11g00965 405 Gene3D - 104 182 - -
Cmo11g00965 405 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 257 404 - -
Cmo11g00965 405 ProSiteProfiles Zinc finger C3H1-type profile. 265 293 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01479 Cmo-Chr6:10642781 Cmo11g00965 Cmo-Chr11:5082995 1.14E-84 dispersed
Cmo11g00965 Cmo-Chr11:5082995 Cmo14g01672 Cmo-Chr14:13175212 1.73E-96 dispersed
Cmo10g00859 Cmo-Chr10:4063513 Cmo11g00965 Cmo-Chr11:5082995 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10590 PF00642 zf-CCCH 2.70E-10 CL0537 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00965 - - csv:101221929 792.727