Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00994 ATGAGGATTATGATAAAAGGTGGTGTTTGGAAGAACACCGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGAAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGATGGTATGAGTGGCTTGATCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGGCGTACTCCATCCCAGTGCCTCGAGCGGTACGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCGGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCCAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGAAGAGAGCTGAAAGCTGCAGGGATTGATACTCGACATCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAGAGGCCTCCTCCAGGGTTTTTTGATGTTGGTGAGGAAGATAGACCAGTGGAACAACCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGCAAAAGAAGGATTGACGTAGAATCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCGCAGAGGCAAGATGCTCCATCAGCTGTACTGCAGGCAAATAAGCTGAATGATCCAGAGATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTGCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAATGAAGTGCTTGCAGAAGGAAGTGGGGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCCTTTCGAACTCCCCAAAGGACACCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCTGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAACCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAAGAGATTCAAACACCGAATCCCATGCTAACACCCTCAGCAACTCCTGGTGGTGCTGGTCTCACACCTCGTAGTGGCATGACACCAGCTAGGGATGCTTACTCCTTTGGTGTGACTCCCAAAGGAACGCCTATTAGAGATGAGTTACATATCAATGAAGACATGGACACACATGATAGTGCAAAACTAGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGATAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCAGAGGAAGAGGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGACCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAGCTTCTTTCTTTACTAGAGCATGATAATGTGAAGTACCCAATCGATGAAAAGGTCAACAAGGAGAAAAAGAAAGGTTCCAAACGCACAGGAAATAGACCTGCTGCGGCCATCCCTACCATAGACGATTTTGAAGAAACTGAGATGCAAGAGGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAACCCTTAGAGGAATTTGTGGAAGCTCACAAAACGTGCTTGAACGATCTTATGTATTTCCCCACTAGGAGTGCATATGGACTTTCCAGCGTGGCTGGCAACCATGAGAAACTAGCCGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACGCATGGCTATGAGGCTTTTGGTTCTCAGTCGTTGCCTTTTGTTTGGTTTTCAGAGGGTGATCTTTTGTGTTGA 2244 44.83 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVESQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQIADHELEEIAKMGYASDLLAGNEVLAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGAGLTPRSGMTPARDAYSFGVTPKGTPIRDELHINEDMDTHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLSLLEHDNVKYPIDEKVNKEKKKGSKRTGNRPAAAIPTIDDFEETEMQEADYLIKEEARYLCVAMGHENEPLEEFVEAHKTCLNDLMYFPTRSAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYEAFGSQSLPFVWFSEGDLLC 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5321023 5327518 - CmoCh11G009940.1 Cmo11g00994 391613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00994 747 CDD SANT_CDC5_II 55 106 - -
Cmo11g00994 747 MobiDBLite consensus disorder prediction 157 176 - -
Cmo11g00994 747 MobiDBLite consensus disorder prediction 213 234 - -
Cmo11g00994 747 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cmo11g00994 747 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cmo11g00994 747 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 730 - -
Cmo11g00994 747 Coils Coil 167 187 - -
Cmo11g00994 747 SMART sant 58 105 IPR001005 -
Cmo11g00994 747 SMART sant 6 55 IPR001005 -
Cmo11g00994 747 MobiDBLite consensus disorder prediction 113 150 - -
Cmo11g00994 747 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cmo11g00994 747 Gene3D - 5 59 - -
Cmo11g00994 747 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cmo11g00994 747 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cmo11g00994 747 Pfam Myb-like DNA-binding domain 10 70 - -
Cmo11g00994 747 PANTHER - 1 730 - -
Cmo11g00994 747 Gene3D - 60 114 - -
Cmo11g00994 747 MobiDBLite consensus disorder prediction 400 414 - -
Cmo11g00994 747 CDD SANT 10 53 IPR001005 -
Cmo11g00994 747 MobiDBLite consensus disorder prediction 381 425 - -
Cmo11g00994 747 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00994 Cmo-Chr11:5321023 Cmo05g00628 Cmo-Chr5:3159771 9.94E-11 dispersed
Cmo11g00994 Cmo-Chr11:5321023 Cmo10g01075 Cmo-Chr10:5795404 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10592 PF11831 Myb_Cef 8.50E-59 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00994 K12860 - csv:101206265 1355.89