Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00994 ATGAGGATTATGATAAAAGGTGGTGTTTGGAAGAACACCGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGAAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGATGGTATGAGTGGCTTGATCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGGCGTACTCCATCCCAGTGCCTCGAGCGGTACGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCGGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCCAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGAAGAGAGCTGAAAGCTGCAGGGATTGATACTCGACATCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAGAGGCCTCCTCCAGGGTTTTTTGATGTTGGTGAGGAAGATAGACCAGTGGAACAACCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGCAAAAGAAGGATTGACGTAGAATCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCGCAGAGGCAAGATGCTCCATCAGCTGTACTGCAGGCAAATAAGCTGAATGATCCAGAGATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTGCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCCAGTGATCTTCTTGCTGGTAATGAAGTGCTTGCAGAAGGAAGTGGGGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCCTTTCGAACTCCCCAAAGGACACCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCTGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAACCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAAGAGATTCAAACACCGAATCCCATGCTAACACCCTCAGCAACTCCTGGTGGTGCTGGTCTCACACCTCGTAGTGGCATGACACCAGCTAGGGATGCTTACTCCTTTGGTGTGACTCCCAAAGGAACGCCTATTAGAGATGAGTTACATATCAATGAAGACATGGACACACATGATAGTGCAAAACTAGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGATAAAGAAGAACCAGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCAGAGGAAGAGGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGACCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAGCTTCTTTCTTTACTAGAGCATGATAATGTGAAGTACCCAATCGATGAAAAGGTCAACAAGGAGAAAAAGAAAGGTTCCAAACGCACAGGAAATAGACCTGCTGCGGCCATCCCTACCATAGACGATTTTGAAGAAACTGAGATGCAAGAGGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAACCCTTAGAGGAATTTGTGGAAGCTCACAAAACGTGCTTGAACGATCTTATGTATTTCCCCACTAGGAGTGCATATGGACTTTCCAGCGTGGCTGGCAACCATGAGAAACTAGCCGCCCTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAGTTCTCACGCATGGCTATGAGGCTTTTGGTTCTCAGTCGTTGCCTTTTGTTTGGTTTTCAGAGGGTGATCTTTTGTGTTGA 2244 44.83 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVESQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQIADHELEEIAKMGYASDLLAGNEVLAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGAGLTPRSGMTPARDAYSFGVTPKGTPIRDELHINEDMDTHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLSLLEHDNVKYPIDEKVNKEKKKGSKRTGNRPAAAIPTIDDFEETEMQEADYLIKEEARYLCVAMGHENEPLEEFVEAHKTCLNDLMYFPTRSAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYEAFGSQSLPFVWFSEGDLLC 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5321023 5327518 - CmoCh11G009940.1 Cmo11g00994 391613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00994 747 CDD SANT_CDC5_II 55 106 - -
Cmo11g00994 747 MobiDBLite consensus disorder prediction 157 176 - -
Cmo11g00994 747 MobiDBLite consensus disorder prediction 213 234 - -
Cmo11g00994 747 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cmo11g00994 747 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cmo11g00994 747 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 730 - -
Cmo11g00994 747 Coils Coil 167 187 - -
Cmo11g00994 747 SMART sant 58 105 IPR001005 -
Cmo11g00994 747 SMART sant 6 55 IPR001005 -
Cmo11g00994 747 MobiDBLite consensus disorder prediction 113 150 - -
Cmo11g00994 747 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cmo11g00994 747 Gene3D - 5 59 - -
Cmo11g00994 747 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cmo11g00994 747 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cmo11g00994 747 Pfam Myb-like DNA-binding domain 10 70 - -
Cmo11g00994 747 PANTHER - 1 730 - -
Cmo11g00994 747 Gene3D - 60 114 - -
Cmo11g00994 747 MobiDBLite consensus disorder prediction 400 414 - -
Cmo11g00994 747 CDD SANT 10 53 IPR001005 -
Cmo11g00994 747 MobiDBLite consensus disorder prediction 381 425 - -
Cmo11g00994 747 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00994 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101206265 1355.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00994 Cmo-Chr11:5321023 Cmo05g00628 Cmo-Chr5:3159771 9.94E-11 dispersed
Cmo11g00994 Cmo-Chr11:5321023 Cmo10g01075 Cmo-Chr10:5795404 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g01075 . 1 851 MYB-Related Transcription Factor Family AT1G09770 75.9 0.0e+00 1188.3
Cmo11g00994 . 1 728 MYB-Related Transcription Factor Family AT1G09770 81.9 0.0e+00 1144.0
Cmo10g00344 CST 165 630 MYB-Related Transcription Factor Family AT3G18100 55.3 6.9e-148 521.9
Cmo10g00344 CST 165 630 MYB-Related Transcription Factor Family AT3G18100 55.3 6.9e-148 521.9
Cmo10g01075 . 1 851 MYB-Related Transcription Factor Family AT1G09770 75.9 0.0e+00 1188.3
Cmo11g00994 . 1 728 MYB-Related Transcription Factor Family AT1G09770 81.9 0.0e+00 1144.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10592 PF11831 Myb_Cef 8.50E-59 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00994 Cmo_Chr11 FPKM 12.399796 13.053735 12.058415 13.108944 7.859517 7.4564 7.828001 18.795179 17.591484 19.494179