Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01008 ATGGCCGGAATCCCCTCTGAGGGGTTGGGAGATGACTTCTTCGAGCAGATTCTCGCAGTGCAGCCAGGTTACGCCGCCGGAGCAACCGGCGATGTCGTCTCTATTCCGATGGCCTTGCAACTTGGGTCTGGCGGAAGCGGCGGCGGCGACGGGTTGAGAGGGATAGCTGGGCTGCAAGGAGGCGGTGGAGGAGGAGGGATGGGTATGCCGTTGGGGCTGAATTTAGAACAAGGGTTTTTGAGACAAGAGAGGTTTAGAGATGAACTTAATAACAATAATAATAACAATAATACCACTAATAATGCTTCATCTTCTTCCACTGCTTCTTCTGGAATCACTGAGAGAGATTCTTCGGTTCAGCACATGAACGCCTTGTTTCCTTCCTTTGGACATTTGCAGCAGACTCAACAACTCCGGCCACCTCCGCCGCCGTTACATCTTCACCAGCCCTTTCACAATCAGACAAATCCCGGGATGGTTGCTGCTGTACCGCAACCTTCTCAAATCCGCCCGAGAGTTCGAGCACGACGTGGACAAGCGACTGATCCTCATAGTATTGCCGAAAGGTTGCGTCGAGAAAGAATCGCAGAAAGAATGAAGGCCTTGCAGGAGTTGGTTCCTAGCTGCAATAAGACTGATAGGGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGTGGGGCGGGTGCAGTGGCTCAACTTGTGGCCGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGCGGTGCGAATCAACAAGCATGGGAGAAATGGTCAAGTGATGGCACAGAGCAACAAGTAGCAAAACTAATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCAGCCATTTTCAGGACACACCAAGCCGATCCGCCGATCATGGTTAAGCCAGAAATGAACACTCCTTAG 1005 50.35 MAGIPSEGLGDDFFEQILAVQPGYAAGATGDVVSIPMALQLGSGGSGGGDGLRGIAGLQGGGGGGGMGMPLGLNLEQGFLRQERFRDELNNNNNNNNTTNNASSSSTASSGITERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGANQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPPIMVKPEMNTP 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5422138 5427535 + CmoCh11G010080.1 Cmo11g01008 391627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01008 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Cmo11g01008 334 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 323 - -
Cmo11g01008 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 238 IPR036638 GO:0046983
Cmo11g01008 334 SMART finulus 185 234 IPR011598 GO:0046983
Cmo11g01008 334 Gene3D - 172 229 IPR036638 GO:0046983
Cmo11g01008 334 MobiDBLite consensus disorder prediction 89 116 - -
Cmo11g01008 334 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 323 - -
Cmo11g01008 334 Pfam Helix-loop-helix DNA-binding domain 184 228 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01853 Cmo-Chr2:10464025 Cmo11g01008 Cmo-Chr11:5422138 2.88E-09 dispersed
Cmo11g01008 Cmo-Chr11:5422138 Cmo17g01190 Cmo-Chr17:9573292 4.22E-95 dispersed
Cmo11g01008 Cmo-Chr11:5422138 Cmo11g00470 Cmo-Chr11:2301693 1.40E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10595 PF00010 HLH 7.50E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01008 - - cmax:111465659 515.383