Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01008 | ATGGCCGGAATCCCCTCTGAGGGGTTGGGAGATGACTTCTTCGAGCAGATTCTCGCAGTGCAGCCAGGTTACGCCGCCGGAGCAACCGGCGATGTCGTCTCTATTCCGATGGCCTTGCAACTTGGGTCTGGCGGAAGCGGCGGCGGCGACGGGTTGAGAGGGATAGCTGGGCTGCAAGGAGGCGGTGGAGGAGGAGGGATGGGTATGCCGTTGGGGCTGAATTTAGAACAAGGGTTTTTGAGACAAGAGAGGTTTAGAGATGAACTTAATAACAATAATAATAACAATAATACCACTAATAATGCTTCATCTTCTTCCACTGCTTCTTCTGGAATCACTGAGAGAGATTCTTCGGTTCAGCACATGAACGCCTTGTTTCCTTCCTTTGGACATTTGCAGCAGACTCAACAACTCCGGCCACCTCCGCCGCCGTTACATCTTCACCAGCCCTTTCACAATCAGACAAATCCCGGGATGGTTGCTGCTGTACCGCAACCTTCTCAAATCCGCCCGAGAGTTCGAGCACGACGTGGACAAGCGACTGATCCTCATAGTATTGCCGAAAGGTTGCGTCGAGAAAGAATCGCAGAAAGAATGAAGGCCTTGCAGGAGTTGGTTCCTAGCTGCAATAAGACTGATAGGGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGTGGGGCGGGTGCAGTGGCTCAACTTGTGGCCGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGCGGTGCGAATCAACAAGCATGGGAGAAATGGTCAAGTGATGGCACAGAGCAACAAGTAGCAAAACTAATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCAGCCATTTTCAGGACACACCAAGCCGATCCGCCGATCATGGTTAAGCCAGAAATGAACACTCCTTAG | 1005 | 50.35 | MAGIPSEGLGDDFFEQILAVQPGYAAGATGDVVSIPMALQLGSGGSGGGDGLRGIAGLQGGGGGGGMGMPLGLNLEQGFLRQERFRDELNNNNNNNNTTNNASSSSTASSGITERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGANQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPPIMVKPEMNTP | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5422138 | 5427535 | + | CmoCh11G010080.1 | Cmo11g01008 | 391627 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01008 | 334 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 179 | 228 | IPR011598 | GO:0046983 | |
Cmo11g01008 | 334 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 323 | - | - | |
Cmo11g01008 | 334 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 177 | 238 | IPR036638 | GO:0046983 | |
Cmo11g01008 | 334 | SMART | finulus | 185 | 234 | IPR011598 | GO:0046983 | |
Cmo11g01008 | 334 | Gene3D | - | 172 | 229 | IPR036638 | GO:0046983 | |
Cmo11g01008 | 334 | MobiDBLite | consensus disorder prediction | 89 | 116 | - | - | |
Cmo11g01008 | 334 | PANTHER | DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED | 7 | 323 | - | - | |
Cmo11g01008 | 334 | Pfam | Helix-loop-helix DNA-binding domain | 184 | 228 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01853 | Cmo-Chr2:10464025 | Cmo11g01008 | Cmo-Chr11:5422138 | 2.88E-09 | dispersed | |
Cmo11g01008 | Cmo-Chr11:5422138 | Cmo17g01190 | Cmo-Chr17:9573292 | 4.22E-95 | dispersed | |
Cmo11g01008 | Cmo-Chr11:5422138 | Cmo11g00470 | Cmo-Chr11:2301693 | 1.40E-61 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10595 | PF00010 | HLH | 7.50E-08 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01008 | - | - | cmax:111465659 | 515.383 |