Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01013 ATGAAACATATTTTCAAGAAGTTTCATATTGGAAGCAATCACGAGCCGAATCGGCCTAACGAGAATCCGTTGCCTGGAGCAGCGTCGTCGTCAGATAATCGTCCTGCAACTGCTCCGGGGCAGATTTCCGGCAACTCTCCGTCGAGTCCTTCGTCGTCGCCGTTGCCGTCGCCGTCGCTGGCAACAACTCCCCCAGGGGGCGGAAGCACGGCTTCGGTTTCGGTAGCTCCTAATCGGTCTGACTACTTTTCTTCAGAGGAAGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCCTCGAATTCCGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCAACGCTTTTGAGCTTGGGAAATCACCGGATTGATTCCACTTCCAGGGACCAAGTAGATGCTGCCGAGGCGCTTTCGCGGCAATATTGGGAATATAATCTCCTTGACTATGAAGAAAAAGTTGTCAATGGGTTTTATGATGTCCTCTCTACGGATTCAACAGTCCAAGGAAAAATTCCATCTCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTTGTAATGGTCAATATGACTGTTGATTCTGCACTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGCACTGAGGTGAGAGTTTTGGTTCAGAGGCTTGCTGAGCTCGTTATGGGACACATGGGTGGACCTGTAAAGGACGCCAATTTTATGCTAGCTAGGTGGATGGAAAGAAGCACAGAGTTAAGAACTTCTCTTCACACAAGTGTGTTGCCTATTGGTTCCATTAATATTGGCCTCTCAAGACACCGTGCATTGCTTTTCAAGGTGTTAGCTGACGGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATCATAAAGATGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACGCTTATACCAGCAGACGTATTGAATGCAAAGGACACTACTATGTTGAAGCCTTACAACCCTAAAGTAAGCAAAATTTCTTCTCTCCACTACTCTAATGATGTTGAAATTTCTTCCACGAAACCAACACCATCACTTGAGGAAAGCAGCAGTCAAAACTATGAAGCAGAGGGCAGCTCACTGGTGGATGGGAAACTGGGCTATGGAAGGACAGAGTCTGTGCCCTCAAGCTCAGGTACTGGGACTTCTCGATACAAAGGGGTCCATTCTGGTGATAGTAATGTTAGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGCTCCGAGGATCCCAAAAATCTTTTTGCAGATCTTAATCCTTTCCAGATAAAAGGAACTGGAAAAAGTTTCATTCTTAATAAATCCTCTGATAATAAAATTGAGGAGCTCCAGAAACCTACTACTGGGCATCCTCCTGTACCGTTGTGGAAAAATCGAGTTGCATTCAATGCTGTTCCCAAGAAAAAAGAGTACGATTATATGGAGGGTCGTCTTCCAAGAATTAATTGTGGATATAATGATCATAATATGGCATCATCTTCTTCTGCCAACTCTACAGTCTCTGAAAGTGTCAGCCTTTGTGGTTCAGGAACATCCATTGAATCAAATGTATCAATTAGAAGTGCTGAAGTTGGAAGTTCTTCATCTTATATGCACTCTCGGTCAACATCTGCCATGATTGAGCCTAATATTTTGCCTTCGATTGATGAACAGAACAGAAAGCAGAATGGAGAACATTCTGGAAGTACAGACTTGCAGGATAAAAATGTTGATACTGTTGATGGATGCGATAGTTTAATCAAATTTGATAATTGTAGAAAGTTCACATATGACAGATCTGTTGGAACCAATTTGATATCGAAGGATATGAGAAGTTCCAGCCCATCAATTGATCCAAGTTCGAATAGGTTTGAGAAAGTTTATGATGATGTGGATGTAGGCCAATGTGAAATACAATGGGAGGACCTCATTATCGGTGAAAGGATTGGACTAGGTTCATATGGAGAAGTCTACAATGCTGATTGGAATGGCACAGAGGTTGCGGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTACTGATAATGCGACAACTACGTCATCCAAATATTGTTCTTTTTATGGGTGCAGTCACTCGTCCTCCTAACCTTTCCATTGTCACCGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCATCGCCCACATTGTCAAATTGATGAAAAACGCAGAATAAAAATGGCCCTTGATGTGGCAAAGGGCATGAATTGCTTGCATACAAGTCATCCAACAATTGTTCACCGAGATCTGAAGTCACCGAATCTTTTAGTTGATAAGAACTGGAATGTGAAGGTATCAGATTTTGGGTTGTCGCGCCTGAAGCACCACACATTTTTGTCATCCAAATCAACCGGAGGAACGCCTGAGTGGATGGCGCCAGAGGTTCTCCGGAATGAGCCTTCAAATGAAAAGTGCGACGTTTATAGCTTTGGAATCATTCTATGGGAACTTGCTACATTAAGACTACCTTGGAGTGGTATGAATCCTATGCAAGTTGTTGGTGCAGTCGGTTTCCAGAATCGACGACTCGAAATACCCAAGGAAGTAGATCCCGCGGTTGCAAGGATAATCTGGGAATGCTGGCAAACCGATCCGAACTTGCGGCCCTCATTTGCACAATTAGCCAATTTTCTTAAGCCTCTGCAGCAACTCGTCCTGCCACCGCATTCAGACCAGCCGAGTTCGTCGATGCTGCAAGAGATTTCTGTAAATTCTACACCTTGA 2841 43.86 MKHIFKKFHIGSNHEPNRPNENPLPGAASSSDNRPATAPGQISGNSPSSPSSSPLPSPSLATTPPGGGSTASVSVAPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTSRDQVDAAEALSRQYWEYNLLDYEEKVVNGFYDVLSTDSTVQGKIPSLSDIEASFGSSGFEVVMVNMTVDSALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDANFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADGIKMPCRLVKGSHYTGVEEDAVNIIKMEDEREFLVDLMAAPGTLIPADVLNAKDTTMLKPYNPKVSKISSLHYSNDVEISSTKPTPSLEESSSQNYEAEGSSLVDGKLGYGRTESVPSSSGTGTSRYKGVHSGDSNVRLNVNVVPFGQSSEDPKNLFADLNPFQIKGTGKSFILNKSSDNKIEELQKPTTGHPPVPLWKNRVAFNAVPKKKEYDYMEGRLPRINCGYNDHNMASSSSANSTVSESVSLCGSGTSIESNVSIRSAEVGSSSSYMHSRSTSAMIEPNILPSIDEQNRKQNGEHSGSTDLQDKNVDTVDGCDSLIKFDNCRKFTYDRSVGTNLISKDMRSSSPSIDPSSNRFEKVYDDVDVGQCEIQWEDLIIGERIGLGSYGEVYNADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPHCQIDEKRRIKMALDVAKGMNCLHTSHPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHHTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPAVARIIWECWQTDPNLRPSFAQLANFLKPLQQLVLPPHSDQPSSSMLQEISVNSTP 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5497639 5508426 + CmoCh11G010130.1 Cmo11g01013 391632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01013 946 Gene3D Phosphorylase Kinase; domain 1 658 742 - -
Cmo11g01013 946 MobiDBLite consensus disorder prediction 366 387 - -
Cmo11g01013 946 MobiDBLite consensus disorder prediction 15 50 - -
Cmo11g01013 946 PRINTS Tyrosine kinase catalytic domain signature 739 752 IPR001245 GO:0004672|GO:0006468
Cmo11g01013 946 PRINTS Tyrosine kinase catalytic domain signature 778 796 IPR001245 GO:0004672|GO:0006468
Cmo11g01013 946 PRINTS Tyrosine kinase catalytic domain signature 825 835 IPR001245 GO:0004672|GO:0006468
Cmo11g01013 946 PRINTS Tyrosine kinase catalytic domain signature 844 866 IPR001245 GO:0004672|GO:0006468
Cmo11g01013 946 PRINTS Tyrosine kinase catalytic domain signature 888 910 IPR001245 GO:0004672|GO:0006468
Cmo11g01013 946 ProSiteProfiles Protein kinase domain profile. 665 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01013 946 CDD STKc_MAP3K-like 671 917 - -
Cmo11g01013 946 SUPERFAMILY Protein kinase-like (PK-like) 656 936 IPR011009 -
Cmo11g01013 946 SMART serkin_6 665 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01013 946 PANTHER SERINE-THREONINE PROTEIN KINASE 404 939 - -
Cmo11g01013 946 PANTHER SERINE-THREONINE PROTEIN KINASE 73 411 - -
Cmo11g01013 946 MobiDBLite consensus disorder prediction 400 420 - -
Cmo11g01013 946 Gene3D Transferase(Phosphotransferase) domain 1 744 925 - -
Cmo11g01013 946 MobiDBLite consensus disorder prediction 366 420 - -
Cmo11g01013 946 Pfam Protein tyrosine and serine/threonine kinase 666 917 IPR001245 GO:0004672|GO:0006468
Cmo11g01013 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Cmo11g01013 946 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Cmo11g01013 946 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 73 411 - -
Cmo11g01013 946 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 404 939 - -
Cmo11g01013 946 MobiDBLite consensus disorder prediction 1 74 - -
Cmo11g01013 946 Pfam Ethylene-responsive protein kinase Le-CTR1 137 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00336 Cmo-Chr9:1444748 Cmo11g01013 Cmo-Chr11:5497639 4.47E-72 dispersed
Cmo09g00582 Cmo-Chr9:2850373 Cmo11g01013 Cmo-Chr11:5497639 1.42E-29 dispersed
Cmo10g01118 Cmo-Chr10:7735507 Cmo11g01013 Cmo-Chr11:5497639 0 dispersed
Cmo11g01013 Cmo-Chr11:5497639 Cmo18g00050 Cmo-Chr18:323440 1.50E-59 dispersed
Cmo11g01013 Cmo-Chr11:5497639 Cmo01g01773 Cmo-Chr1:13120602 1.10E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74673 PF07714 PK_Tyr_Ser-Thr 6.50E-63 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01013 - - cpep:111793388 1812.35