Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01013 | ATGAAACATATTTTCAAGAAGTTTCATATTGGAAGCAATCACGAGCCGAATCGGCCTAACGAGAATCCGTTGCCTGGAGCAGCGTCGTCGTCAGATAATCGTCCTGCAACTGCTCCGGGGCAGATTTCCGGCAACTCTCCGTCGAGTCCTTCGTCGTCGCCGTTGCCGTCGCCGTCGCTGGCAACAACTCCCCCAGGGGGCGGAAGCACGGCTTCGGTTTCGGTAGCTCCTAATCGGTCTGACTACTTTTCTTCAGAGGAAGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCCTCGAATTCCGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCAACGCTTTTGAGCTTGGGAAATCACCGGATTGATTCCACTTCCAGGGACCAAGTAGATGCTGCCGAGGCGCTTTCGCGGCAATATTGGGAATATAATCTCCTTGACTATGAAGAAAAAGTTGTCAATGGGTTTTATGATGTCCTCTCTACGGATTCAACAGTCCAAGGAAAAATTCCATCTCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTTGTAATGGTCAATATGACTGTTGATTCTGCACTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGCACTGAGGTGAGAGTTTTGGTTCAGAGGCTTGCTGAGCTCGTTATGGGACACATGGGTGGACCTGTAAAGGACGCCAATTTTATGCTAGCTAGGTGGATGGAAAGAAGCACAGAGTTAAGAACTTCTCTTCACACAAGTGTGTTGCCTATTGGTTCCATTAATATTGGCCTCTCAAGACACCGTGCATTGCTTTTCAAGGTGTTAGCTGACGGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATCATAAAGATGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACGCTTATACCAGCAGACGTATTGAATGCAAAGGACACTACTATGTTGAAGCCTTACAACCCTAAAGTAAGCAAAATTTCTTCTCTCCACTACTCTAATGATGTTGAAATTTCTTCCACGAAACCAACACCATCACTTGAGGAAAGCAGCAGTCAAAACTATGAAGCAGAGGGCAGCTCACTGGTGGATGGGAAACTGGGCTATGGAAGGACAGAGTCTGTGCCCTCAAGCTCAGGTACTGGGACTTCTCGATACAAAGGGGTCCATTCTGGTGATAGTAATGTTAGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGCTCCGAGGATCCCAAAAATCTTTTTGCAGATCTTAATCCTTTCCAGATAAAAGGAACTGGAAAAAGTTTCATTCTTAATAAATCCTCTGATAATAAAATTGAGGAGCTCCAGAAACCTACTACTGGGCATCCTCCTGTACCGTTGTGGAAAAATCGAGTTGCATTCAATGCTGTTCCCAAGAAAAAAGAGTACGATTATATGGAGGGTCGTCTTCCAAGAATTAATTGTGGATATAATGATCATAATATGGCATCATCTTCTTCTGCCAACTCTACAGTCTCTGAAAGTGTCAGCCTTTGTGGTTCAGGAACATCCATTGAATCAAATGTATCAATTAGAAGTGCTGAAGTTGGAAGTTCTTCATCTTATATGCACTCTCGGTCAACATCTGCCATGATTGAGCCTAATATTTTGCCTTCGATTGATGAACAGAACAGAAAGCAGAATGGAGAACATTCTGGAAGTACAGACTTGCAGGATAAAAATGTTGATACTGTTGATGGATGCGATAGTTTAATCAAATTTGATAATTGTAGAAAGTTCACATATGACAGATCTGTTGGAACCAATTTGATATCGAAGGATATGAGAAGTTCCAGCCCATCAATTGATCCAAGTTCGAATAGGTTTGAGAAAGTTTATGATGATGTGGATGTAGGCCAATGTGAAATACAATGGGAGGACCTCATTATCGGTGAAAGGATTGGACTAGGTTCATATGGAGAAGTCTACAATGCTGATTGGAATGGCACAGAGGTTGCGGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTACTGATAATGCGACAACTACGTCATCCAAATATTGTTCTTTTTATGGGTGCAGTCACTCGTCCTCCTAACCTTTCCATTGTCACCGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCATCGCCCACATTGTCAAATTGATGAAAAACGCAGAATAAAAATGGCCCTTGATGTGGCAAAGGGCATGAATTGCTTGCATACAAGTCATCCAACAATTGTTCACCGAGATCTGAAGTCACCGAATCTTTTAGTTGATAAGAACTGGAATGTGAAGGTATCAGATTTTGGGTTGTCGCGCCTGAAGCACCACACATTTTTGTCATCCAAATCAACCGGAGGAACGCCTGAGTGGATGGCGCCAGAGGTTCTCCGGAATGAGCCTTCAAATGAAAAGTGCGACGTTTATAGCTTTGGAATCATTCTATGGGAACTTGCTACATTAAGACTACCTTGGAGTGGTATGAATCCTATGCAAGTTGTTGGTGCAGTCGGTTTCCAGAATCGACGACTCGAAATACCCAAGGAAGTAGATCCCGCGGTTGCAAGGATAATCTGGGAATGCTGGCAAACCGATCCGAACTTGCGGCCCTCATTTGCACAATTAGCCAATTTTCTTAAGCCTCTGCAGCAACTCGTCCTGCCACCGCATTCAGACCAGCCGAGTTCGTCGATGCTGCAAGAGATTTCTGTAAATTCTACACCTTGA | 2841 | 43.86 | MKHIFKKFHIGSNHEPNRPNENPLPGAASSSDNRPATAPGQISGNSPSSPSSSPLPSPSLATTPPGGGSTASVSVAPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTSRDQVDAAEALSRQYWEYNLLDYEEKVVNGFYDVLSTDSTVQGKIPSLSDIEASFGSSGFEVVMVNMTVDSALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDANFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADGIKMPCRLVKGSHYTGVEEDAVNIIKMEDEREFLVDLMAAPGTLIPADVLNAKDTTMLKPYNPKVSKISSLHYSNDVEISSTKPTPSLEESSSQNYEAEGSSLVDGKLGYGRTESVPSSSGTGTSRYKGVHSGDSNVRLNVNVVPFGQSSEDPKNLFADLNPFQIKGTGKSFILNKSSDNKIEELQKPTTGHPPVPLWKNRVAFNAVPKKKEYDYMEGRLPRINCGYNDHNMASSSSANSTVSESVSLCGSGTSIESNVSIRSAEVGSSSSYMHSRSTSAMIEPNILPSIDEQNRKQNGEHSGSTDLQDKNVDTVDGCDSLIKFDNCRKFTYDRSVGTNLISKDMRSSSPSIDPSSNRFEKVYDDVDVGQCEIQWEDLIIGERIGLGSYGEVYNADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPHCQIDEKRRIKMALDVAKGMNCLHTSHPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHHTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPAVARIIWECWQTDPNLRPSFAQLANFLKPLQQLVLPPHSDQPSSSMLQEISVNSTP | 946 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5497639 | 5508426 | + | CmoCh11G010130.1 | Cmo11g01013 | 391632 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01013 | 946 | Gene3D | Phosphorylase Kinase; domain 1 | 658 | 742 | - | - | |
Cmo11g01013 | 946 | MobiDBLite | consensus disorder prediction | 366 | 387 | - | - | |
Cmo11g01013 | 946 | MobiDBLite | consensus disorder prediction | 15 | 50 | - | - | |
Cmo11g01013 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 739 | 752 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01013 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 778 | 796 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01013 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 825 | 835 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01013 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 844 | 866 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01013 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 888 | 910 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01013 | 946 | ProSiteProfiles | Protein kinase domain profile. | 665 | 924 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01013 | 946 | CDD | STKc_MAP3K-like | 671 | 917 | - | - | |
Cmo11g01013 | 946 | SUPERFAMILY | Protein kinase-like (PK-like) | 656 | 936 | IPR011009 | - | |
Cmo11g01013 | 946 | SMART | serkin_6 | 665 | 917 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01013 | 946 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 404 | 939 | - | - | |
Cmo11g01013 | 946 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 73 | 411 | - | - | |
Cmo11g01013 | 946 | MobiDBLite | consensus disorder prediction | 400 | 420 | - | - | |
Cmo11g01013 | 946 | Gene3D | Transferase(Phosphotransferase) domain 1 | 744 | 925 | - | - | |
Cmo11g01013 | 946 | MobiDBLite | consensus disorder prediction | 366 | 420 | - | - | |
Cmo11g01013 | 946 | Pfam | Protein tyrosine and serine/threonine kinase | 666 | 917 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo11g01013 | 946 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 784 | 796 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo11g01013 | 946 | ProSitePatterns | Protein kinases ATP-binding region signature. | 671 | 693 | IPR017441 | GO:0005524 | |
Cmo11g01013 | 946 | PANTHER | SERINE/THREONINE-PROTEIN KINASE EDR1 | 73 | 411 | - | - | |
Cmo11g01013 | 946 | PANTHER | SERINE/THREONINE-PROTEIN KINASE EDR1 | 404 | 939 | - | - | |
Cmo11g01013 | 946 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
Cmo11g01013 | 946 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 137 | 332 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00336 | Cmo-Chr9:1444748 | Cmo11g01013 | Cmo-Chr11:5497639 | 4.47E-72 | dispersed | |
Cmo09g00582 | Cmo-Chr9:2850373 | Cmo11g01013 | Cmo-Chr11:5497639 | 1.42E-29 | dispersed | |
Cmo10g01118 | Cmo-Chr10:7735507 | Cmo11g01013 | Cmo-Chr11:5497639 | 0 | dispersed | |
Cmo11g01013 | Cmo-Chr11:5497639 | Cmo18g00050 | Cmo-Chr18:323440 | 1.50E-59 | dispersed | |
Cmo11g01013 | Cmo-Chr11:5497639 | Cmo01g01773 | Cmo-Chr1:13120602 | 1.10E-69 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74673 | PF07714 | PK_Tyr_Ser-Thr | 6.50E-63 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01013 | - | - | cpep:111793388 | 1812.35 |