Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01018 ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAGGACGACGAAGAATCTCTCGACGATGATGACGACGACGAAGAGGAGGAGGAATTGAACGACGGTCCTTCCCCTTCCACTTCCTCTGCTGGCGCCGTTGCTGTTCCTTCTGTTTCCCCCGTCGTTACCATCGCCACTCCCGGCACTGCCGTCCGTCCGGTCTCCATTGTTCCTCCCCCTTCGATTGTCTCCATCTCCTCTGCCGTTCTGATCCGTCAGCGCATCGGGACCGCTGCGGCCGAGCCTTTGGTCTTGCCGGGTGAGAAGAAGCCCTTGGATGAGTGCAGGAAGTTGTTTCAACGCCTCTGGACAGATGAGGATGAGATCGAGCTGTTGCAGGGGTTTTTGGATTACACGATGCAGCGAGGTACGACTCACCATCATCAGAATGATACGGCGTTGTTCTATGACCAGATCAAGTCGAAATTACAGTTGGATTTTAACAAGAATCAGCTCGTTGAGAAGCTTCGGAGGTTGAAGAAGAAGTACCGTAATGTTATTGGTAAGATTAGCTCTGGTAAGGAGTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTTGAGATCTCTCGCAAGATCTGGAGTAATACAGGCCGAATTGGAGTCGAAGACAATGCTTTGGACGATGACGAGCCTGCTCCGCCTCCGTATGCGAACTACATGGACATTAAAAACGAAGAGATGACGTTGAATTGCTCCGAGAAGAAACCCACGCCTACTCCGAAATCCCGGAAGCGTTCACGGCCCGGATCGGGATTGAGAATGGACGGGCCGCGTTCGTCCAACGAAAATTTGAATAAAGAGAAAAACAGTACCTACATCAACAACAACAACAACAGCGAAAATGTCAGTAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCTTTGTTTAAGGAATTATCGAGCACTTCCATGGGAGGAGGGCTCTGTGGAGGTAGAGGGTTCAGTGGATTGGCTTTGCATCCTATTCCATTGAGCTTCGGTGGAGCTTCAATCAATTTTGGAGGTGGAGGAGATATGGCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAGGTTTATTCCAAGAGGTTGGAGTTGGTTCAGGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA 1203 50.87 MDPRNDAVFPDEDLEDDEESLDDDDDDEEEEELNDGPSPSTSSAGAVAVPSVSPVVTIATPGTAVRPVSIVPPPSIVSISSAVLIRQRIGTAAAEPLVLPGEKKPLDECRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKEFNFKSPHDQATFEISRKIWSNTGRIGVEDNALDDDEPAPPPYANYMDIKNEEMTLNCSEKKPTPTPKSRKRSRPGSGLRMDGPRSSNENLNKEKNSTYINNNNNSENVSNVAVAGLIEETVRSCLSPLFKELSSTSMGGGLCGGRGFSGLALHPIPLSFGGASINFGGGGDMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5541713 5542915 + CmoCh11G010180.1 Cmo11g01018 391637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01018 400 MobiDBLite consensus disorder prediction 271 292 - -
Cmo11g01018 400 Pfam Protein of unknown function, DUF573 113 209 IPR007592 GO:0006355
Cmo11g01018 400 PANTHER BNAANNG10740D PROTEIN 2 399 - -
Cmo11g01018 400 MobiDBLite consensus disorder prediction 1 48 - -
Cmo11g01018 400 PANTHER BNAANNG10740D PROTEIN-RELATED 2 399 IPR007592 GO:0006355
Cmo11g01018 400 MobiDBLite consensus disorder prediction 9 35 - -
Cmo11g01018 400 MobiDBLite consensus disorder prediction 244 292 - -
Cmo11g01018 400 Coils Coil 374 394 - -
Cmo11g01018 400 Coils Coil 163 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01018 Cmo-Chr11:5541713 Cmo07g00284 Cmo-Chr7:1392041 1.35E-24 dispersed
Cmo10g01132 Cmo-Chr10:9467595 Cmo11g01018 Cmo-Chr11:5541713 0 transposed
Cmo11g01018 Cmo-Chr11:5541713 Cmo12g01123 Cmo-Chr12:10262600 1.38E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10596 PF04504 DUF573 2.30E-34 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01018 - - cmax:111495335 637.106