Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01018 ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAGGACGACGAAGAATCTCTCGACGATGATGACGACGACGAAGAGGAGGAGGAATTGAACGACGGTCCTTCCCCTTCCACTTCCTCTGCTGGCGCCGTTGCTGTTCCTTCTGTTTCCCCCGTCGTTACCATCGCCACTCCCGGCACTGCCGTCCGTCCGGTCTCCATTGTTCCTCCCCCTTCGATTGTCTCCATCTCCTCTGCCGTTCTGATCCGTCAGCGCATCGGGACCGCTGCGGCCGAGCCTTTGGTCTTGCCGGGTGAGAAGAAGCCCTTGGATGAGTGCAGGAAGTTGTTTCAACGCCTCTGGACAGATGAGGATGAGATCGAGCTGTTGCAGGGGTTTTTGGATTACACGATGCAGCGAGGTACGACTCACCATCATCAGAATGATACGGCGTTGTTCTATGACCAGATCAAGTCGAAATTACAGTTGGATTTTAACAAGAATCAGCTCGTTGAGAAGCTTCGGAGGTTGAAGAAGAAGTACCGTAATGTTATTGGTAAGATTAGCTCTGGTAAGGAGTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTTGAGATCTCTCGCAAGATCTGGAGTAATACAGGCCGAATTGGAGTCGAAGACAATGCTTTGGACGATGACGAGCCTGCTCCGCCTCCGTATGCGAACTACATGGACATTAAAAACGAAGAGATGACGTTGAATTGCTCCGAGAAGAAACCCACGCCTACTCCGAAATCCCGGAAGCGTTCACGGCCCGGATCGGGATTGAGAATGGACGGGCCGCGTTCGTCCAACGAAAATTTGAATAAAGAGAAAAACAGTACCTACATCAACAACAACAACAACAGCGAAAATGTCAGTAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCTTTGTTTAAGGAATTATCGAGCACTTCCATGGGAGGAGGGCTCTGTGGAGGTAGAGGGTTCAGTGGATTGGCTTTGCATCCTATTCCATTGAGCTTCGGTGGAGCTTCAATCAATTTTGGAGGTGGAGGAGATATGGCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAGGTTTATTCCAAGAGGTTGGAGTTGGTTCAGGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA 1203 50.87 MDPRNDAVFPDEDLEDDEESLDDDDDDEEEEELNDGPSPSTSSAGAVAVPSVSPVVTIATPGTAVRPVSIVPPPSIVSISSAVLIRQRIGTAAAEPLVLPGEKKPLDECRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKEFNFKSPHDQATFEISRKIWSNTGRIGVEDNALDDDEPAPPPYANYMDIKNEEMTLNCSEKKPTPTPKSRKRSRPGSGLRMDGPRSSNENLNKEKNSTYINNNNNSENVSNVAVAGLIEETVRSCLSPLFKELSSTSMGGGLCGGRGFSGLALHPIPLSFGGASINFGGGGDMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5541713 5542915 + CmoCh11G010180.1 Cmo11g01018 391637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01018 400 MobiDBLite consensus disorder prediction 271 292 - -
Cmo11g01018 400 Pfam Protein of unknown function, DUF573 113 209 IPR007592 GO:0006355
Cmo11g01018 400 PANTHER BNAANNG10740D PROTEIN 2 399 - -
Cmo11g01018 400 MobiDBLite consensus disorder prediction 1 48 - -
Cmo11g01018 400 PANTHER BNAANNG10740D PROTEIN-RELATED 2 399 IPR007592 GO:0006355
Cmo11g01018 400 MobiDBLite consensus disorder prediction 9 35 - -
Cmo11g01018 400 MobiDBLite consensus disorder prediction 244 292 - -
Cmo11g01018 400 Coils Coil 374 394 - -
Cmo11g01018 400 Coils Coil 163 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01018 - - - cmax:111495335 637.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01018 Cmo-Chr11:5541713 Cmo07g00284 Cmo-Chr7:1392041 1.35E-24 dispersed
Cmo10g01132 Cmo-Chr10:9467595 Cmo11g01018 Cmo-Chr11:5541713 0 transposed
Cmo11g01018 Cmo-Chr11:5541713 Cmo12g01123 Cmo-Chr12:10262600 1.38E-40 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo11g01018 . 102 321 GeBP Transcription Factor Family AT3G04930 50.4 2.3e-47 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10596 PF04504 DUF573 2.30E-34 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01018 Cmo_Chr11 FPKM 0.0 0.0 0.165228 0.156345 0.071853 0.202736 0.0 0.0 0.0 0.0