Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01026 ATGGAAACAATTGATTCAATTACTGGTTTCTCTAATCTTCTTCAACCTCCAGATTTCTCTCAGTATGTTGAAATTGATCCGACTGGCAGATATGGAAGATATAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACCGAGCGTTTGATGAATATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTTTTAAAAACATTGAAGCATAAGAACATTATGAAATTTTATACCTCATGGGTCGATACTGCAAATAGGAACATCAACTTTGTTACTGAAATGTTCACCTCTGGGACTTTGAGGCAATATCGGCTAAAACATAGGAGAGTTAACATTAGAGCAGTGAAGCGATGGTGCAGACAAATCTTGAGGGGTCTTCTCTATTTGCATAGCCAGAACCCCCCTGTGATCCACAGAGATCTCAAGTGCGATAACATTTTAGTTAATGGTAATCAAGGAGAAATTAAAATTGGAGATCTTGGTCTTGCTGCTATTCTCCGGAAATCACATGCTGATCATTGCGTCGGGACACCAGAGTTCATGGCTCCTGAAGTATATGAAGAGGCTTATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACATTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAGTTTCTGGCAAAAAACCAGATGCCTTATATAAAGTGAAGGATCCAAGCATGCGGCAATTTGTCGAGAAATGCTTGGCACCAGTCTCTTGTAGACCTTCAGCAAGAGAACTTTTGAGTGACCCTTTTCTCCAAATTGATGATTGTGAAAGTAAGTTACAACTTTCAGGATGTCCGAGAGAACTCGACGGTATTGCTTTTACTACAGCACACCCTTTCCTTGAACGACAAGGAAGTTTCAGCTCGATTAATTACCGTTTGGAGGCCTCAGATGAATGGAGGTGTCATTCGGTTCAGACTGAACCCGATGGGTTCGAACTTTTTGAGAATGATGATGATGACCAATTGGAAAACCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAGCATTGTTCTAAGACTTAGGATTGCAGATAAAGAAGGACGGATTCGAAACATTTACTTCCCGTTTGACACCAAGAATGATACAGCATTAACGGTTGCTACTGAAATGATAGCAGAACTTGATATTACCGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTGGTACCGGAGTGGAAGTCGGGGCCTGGAATAGACGAAACACCTCGTATCTCTTACGATGGTGACTGTCAAAGCCACGACGCTGCTAACCATTCATGTGATCATAGTTTGATAGGGAATAACCAAAATGGAGAAAAACTCTATCAGATTTTAAACTTAAGCACAGTTGAACGTGCTTCGGTGCACGAACTTTTCAAGCAGGACTCCCTCAAAGCTGATCGGCCTCCAGAACCTGTGGTAGAGAGTCCACCAAAAGTGTCAAGCCAGCATTATCAGCCAAACTCAGTCCTCCTTGAAGATCCAGCTCTTGGTTCTCATAGTTTTAGGCATAGCCATTCTAATCAAAATTTCAAGAAAATAGGCCAGTCGATCATTGTTGGGGATGACAAAGAAAAAATACTAGATAAAAATGCCATTGCAAGAACTTCACTCAGAAGCTTGCTGGGTTCCCGATCGCTGTCTACAGTTCCGTCCTATCGTGAAGATAAATTTGCATCCCAAATTCATCGAGAAATTAGATGGCTATGGAATTGA 1842 40.72 METIDSITGFSNLLQPPDFSQYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKRWCRQILRGLLYLHSQNPPVIHRDLKCDNILVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVVSGKKPDALYKVKDPSMRQFVEKCLAPVSCRPSARELLSDPFLQIDDCESKLQLSGCPRELDGIAFTTAHPFLERQGSFSSINYRLEASDEWRCHSVQTEPDGFELFENDDDDQLENLDNSIKGKIREDGSIVLRLRIADKEGRIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVPEWKSGPGIDETPRISYDGDCQSHDAANHSCDHSLIGNNQNGEKLYQILNLSTVERASVHELFKQDSLKADRPPEPVVESPPKVSSQHYQPNSVLLEDPALGSHSFRHSHSNQNFKKIGQSIIVGDDKEKILDKNAIARTSLRSLLGSRSLSTVPSYREDKFASQIHREIRWLWN 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5621327 5624702 - CmoCh11G010260.1 Cmo11g01026 391645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01026 613 Gene3D Transferase(Phosphotransferase) domain 1 115 295 - -
Cmo11g01026 613 MobiDBLite consensus disorder prediction 503 527 - -
Cmo11g01026 613 ProSiteProfiles Protein kinase domain profile. 32 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01026 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Cmo11g01026 613 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 613 - -
Cmo11g01026 613 Pfam Protein kinase domain 35 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01026 613 SUPERFAMILY Protein kinase-like (PK-like) 35 290 IPR011009 -
Cmo11g01026 613 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Cmo11g01026 613 Gene3D - 376 444 - -
Cmo11g01026 613 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 433 IPR024678 GO:0004674|GO:0005524
Cmo11g01026 613 CDD STKc_WNK 30 289 - -
Cmo11g01026 613 SMART serkin_6 32 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01026 613 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 14 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01026 Cmo-Chr11:5621327 Cmo17g00224 Cmo-Chr17:1320289 0 dispersed
Cmo11g01026 Cmo-Chr11:5621327 Cmo12g01126 Cmo-Chr12:10272669 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74674 PF00069 Pkinase 1.40E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01026 K08867 - csv:101222641 985.326