Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01044 ATGAGTTCTTCTCAGGATCCTCAGCTTGTTCAACAACAATCCGTTGTGGATGTTGAAGAATTCGTCTCCGTTGAAAACCCCGATTCCAAACGCTCCCAGTTTGGATCGTTGTTCAAAAACCATTACCCTCCTGGCTTTTCCCGGAAGCTTGTGGCGGAGGTGATTGCGACGTATTTGCTAGTGTTTGTAACGTGTGGGGCGGCGGCATTGAACGGGAGCGATGTGCAAAGAGTGTCGCAGCTTGGTGCCTCGGTCGCCGGTGGCCTTATTGTGACGGTGATGATTTATGCCGTCGGACACATTTCCGGCGCCCATATGAACCCGGCTGTCACCACGGCTTTTGCTGCAACACGACACTTTCCATGGAAACAGGTTCCATTGTATGCAGCAGCTCAATTGAGTGGGGCAACCTGTGCAGCCTTTACACTGCGCCTATTATTACATCCCATCAAACACTTGGGCACTACCACGCCATCAGGATCAGATTTACAAGCACTCGTCATGGAGATTGTTGTTACCTTCTCAATGATGTTTGTCACTTGTGCTGTTGCAACCGATACCAAAGCCGTGGGAGAGCTGGCAGGTTTGGCAGTTGGTTCTGCCGTGTGTATCACATCCATCTTGGCTGGGTAA 633 50.71 MSSSQDPQLVQQQSVVDVEEFVSVENPDSKRSQFGSLFKNHYPPGFSRKLVAEVIATYLLVFVTCGAAALNGSDVQRVSQLGASVAGGLIVTVMIYAVGHISGAHMNPAVTTAFAATRHFPWKQVPLYAAAQLSGATCAAFTLRLLLHPIKHLGTTTPSGSDLQALVMEIVVTFSMMFVTCAVATDTKAVGELAGLAVGSAVCITSILAG 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5789335 5793432 + CmoCh11G010440.1 Cmo11g01044 391663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01044 210 SUPERFAMILY Aquaporin-like 42 208 IPR023271 -
Cmo11g01044 210 Pfam Major intrinsic protein 46 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01044 210 Gene3D Glycerol uptake facilitator protein. 7 210 IPR023271 -
Cmo11g01044 210 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01044 210 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01044 210 PRINTS Major intrinsic protein family signature 48 67 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01044 210 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01044 210 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 17 210 - -
Cmo11g01044 210 PANTHER AQUAPORIN NIP2-1 17 210 IPR034294 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01044 Cmo14g00596 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01044 Cmo-Chr11:5789335 Cmo14g00597 Cmo-Chr14:3025643 1.91E-96 dispersed
Cmo11g01044 Cmo-Chr11:5789335 Cmo11g01045 Cmo-Chr11:5812697 8.68E-94 tandem
Cmo11g01044 Cmo-Chr11:5789335 Cmo14g00596 Cmo-Chr14:3016805 2.49E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01044 K09874 - csv:101205692 360.918