Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01045 ATGGCCGTAGAGAACCCCGATTGGAGGTCCATCAATGAAGAAGCCTTCATCTCCTTCAGAATCGAATACCCTCATCCTCAACAATCCTTCTTCCGCCACCGATTTCACCAACTTTACCCGCCCGAGTTCTACCAAAAGGTTGTGGCAGAGCTGATTGCTACGTATTTGCTTGTGTTTGTGACATGCGGGACGGCGGCATTGAGTGTCCATGATGAGCGGCAACTGCCCAAGCTTGGCGCGTCCATTGCGGGCGGCCTTATTGTCATGGTCATGATTTACGCTGTCGGACATATCTCCGGCGCTCATATGAATCCCGCGGTTACTTTTACTTTTGCTTCTCTTAGGCGATTTCCTTGGAAACAGGTTCCACTCTATGTAGCTGGTCAACTAAGTGGTGCTACATCGGCAGCTTTTACCCTGCGCATATTATTGGACCCAATTAAAGAAATAGGCACTACTACACCTTCTGGTTCCGACCTAAAAGCACTTCTCATGGAGATTGTTGTCTCATTCTGTATGATGTTCGTCACTTTTGCGGTTGCCACCGACACAAAAGCAAGAGGAGAGGTTGCAGGTATAGCAGTCGGTTCAGCTGTTTGTATCACATCCATCTTTGCAGGGTCTATATCGGGTGGATCGATGAACCCTGCGAGGACAATTGGACCTGCCATTGCAAGTTCACATTATGAAGGAGTTTGGGTGTATCTGGTCGGGCCAGTTATAGGGACGTTATTGGGAGCATGGTCATATAATTTCGTACGAGTGAGTGAAAAACATGGACATTAA 786 47.84 MAVENPDWRSINEEAFISFRIEYPHPQQSFFRHRFHQLYPPEFYQKVVAELIATYLLVFVTCGTAALSVHDERQLPKLGASIAGGLIVMVMIYAVGHISGAHMNPAVTFTFASLRRFPWKQVPLYVAGQLSGATSAAFTLRILLDPIKEIGTTTPSGSDLKALLMEIVVSFCMMFVTFAVATDTKARGEVAGIAVGSAVCITSIFAGSISGGSMNPARTIGPAIASSHYEGVWVYLVGPVIGTLLGAWSYNFVRVSEKHGH 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5812697 5815046 + CmoCh11G010450.1 Cmo11g01045 391664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01045 261 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01045 261 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01045 261 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01045 261 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01045 261 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01045 261 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01045 261 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 19 257 - -
Cmo11g01045 261 CDD MIP 45 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01045 261 PANTHER AQUAPORIN NIP2-1 19 257 IPR034294 -
Cmo11g01045 261 TIGRFAM MIP: MIP family channel proteins 49 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01045 261 Pfam Major intrinsic protein 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo11g01045 261 Gene3D Glycerol uptake facilitator protein. 21 260 IPR023271 -
Cmo11g01045 261 SUPERFAMILY Aquaporin-like 36 255 IPR023271 -
Cmo11g01045 261 ProSitePatterns MIP family signature. 102 110 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01045 Cmo-Chr11:5812697 Cmo14g00597 Cmo-Chr14:3025643 1.59E-153 dispersed
Cmo11g01044 Cmo-Chr11:5789335 Cmo11g01045 Cmo-Chr11:5812697 8.68E-94 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01045 K09874 - csv:101205456 371.318