Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01047 | ATGGATTTGATTCCTGCAATTTCCACCGCCGCTGCCGCCATTACCACCGGCGGAGGAGGAGCTGTGAAATCCCCTGAATTTGACGCGGAAACACCCATCAAATTCCAACCAACCACCAAATCTCACTCCTTCACCAATGGTGTCCTCAAGCGCCACCACCACACGCCGCCCCCACCTCCGTCGCTGGTCTACAAAGAATGCCTCAAGAATCACGCTGCCAGTATGGGCGGCCATGCTCTGGACGGCTGCGGCGAGTTCATGCCCTCCCCTACCGCTACTACCACAGATCCAACCTCTTTCAAATGCGTCGCCTGTGGCTGCCATCGGAATTTCCACCGCCGTGAGCCAGAAGATACAATCGCCACTCCGACGACAACCCATGTCATTGAGTATCAACCCCACCACCGTCATCATCCGCCGCCGCCGCCTGCCCACAGAAGCCCAAACTCTGCCTCTCCTCCACCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCTTATCCGGCAGCATGACAGAGAACGCCGGCGGCGGATTCCACCACTCAATTCTGACGCCGAGTTCGAATTCGAGAAAACGATTCAGAACGAAATTTACTCAAAATCAAAAGGATAAAATGTATGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATTTGATTCAAGACTTCTGTAGCCACGTCGGAGTCGACAGAGGCGTTCTCAAAGTCTGGATGCATAACAACAAGAACACTCTCTGTAAAAAAGACGGCGCCCAAAACATCAACGGCCACGGCGATGGAGACGACGACACAAAAATTAACGGCGGCGGCGCAAATGGGTCATCATCTTCCTCTTGA | 864 | 53.47 | MDLIPAISTAAAAITTGGGGAVKSPEFDAETPIKFQPTTKSHSFTNGVLKRHHHTPPPPPSLVYKECLKNHAASMGGHALDGCGEFMPSPTATTTDPTSFKCVACGCHRNFHRREPEDTIATPTTTHVIEYQPHHRHHPPPPPAHRSPNSASPPPISSSYYPSAPHMLLALSGSMTENAGGGFHHSILTPSSNSRKRFRTKFTQNQKDKMYEFAEKVGWKIQKRDEDLIQDFCSHVGVDRGVLKVWMHNNKNTLCKKDGAQNINGHGDGDDDTKINGGGANGSSSSS | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5821076 | 5821939 | + | CmoCh11G010470.1 | Cmo11g01047 | 391666 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01047 | 287 | MobiDBLite | consensus disorder prediction | 132 | 159 | - | - | |
Cmo11g01047 | 287 | SUPERFAMILY | Homeodomain-like | 189 | 254 | IPR009057 | - | |
Cmo11g01047 | 287 | MobiDBLite | consensus disorder prediction | 259 | 287 | - | - | |
Cmo11g01047 | 287 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 12 | 266 | - | - | |
Cmo11g01047 | 287 | Gene3D | - | 187 | 256 | - | - | |
Cmo11g01047 | 287 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 64 | 115 | IPR006456 | - | |
Cmo11g01047 | 287 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 195 | 252 | IPR006455 | - | |
Cmo11g01047 | 287 | Pfam | ZF-HD protein dimerisation region | 63 | 116 | IPR006456 | - | |
Cmo11g01047 | 287 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 64 | 115 | IPR006456 | - | |
Cmo11g01047 | 287 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 12 | 266 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01047 | Cmo-Chr11:5821076 | Cmo15g00285 | Cmo-Chr15:1345770 | 5.87E-83 | dispersed | |
Cmo11g01047 | Cmo-Chr11:5821076 | Cmo14g00601 | Cmo-Chr14:3042234 | 1.87E-144 | wgd | |
Cmo11g01047 | Cmo-Chr11:5821076 | Cmo04g02895 | Cmo-Chr4:20605577 | 1.63E-80 | wgd | |
Cmo11g01047 | Cmo-Chr11:5821076 | Cmo04g01734 | Cmo-Chr4:8784011 | 3.90E-09 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10599 | PF04770 | ZF-HD_dimer | 6.80E-28 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01047 | - | - | csv:101204974 | 433.335 |