Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01047 ATGGATTTGATTCCTGCAATTTCCACCGCCGCTGCCGCCATTACCACCGGCGGAGGAGGAGCTGTGAAATCCCCTGAATTTGACGCGGAAACACCCATCAAATTCCAACCAACCACCAAATCTCACTCCTTCACCAATGGTGTCCTCAAGCGCCACCACCACACGCCGCCCCCACCTCCGTCGCTGGTCTACAAAGAATGCCTCAAGAATCACGCTGCCAGTATGGGCGGCCATGCTCTGGACGGCTGCGGCGAGTTCATGCCCTCCCCTACCGCTACTACCACAGATCCAACCTCTTTCAAATGCGTCGCCTGTGGCTGCCATCGGAATTTCCACCGCCGTGAGCCAGAAGATACAATCGCCACTCCGACGACAACCCATGTCATTGAGTATCAACCCCACCACCGTCATCATCCGCCGCCGCCGCCTGCCCACAGAAGCCCAAACTCTGCCTCTCCTCCACCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCTTATCCGGCAGCATGACAGAGAACGCCGGCGGCGGATTCCACCACTCAATTCTGACGCCGAGTTCGAATTCGAGAAAACGATTCAGAACGAAATTTACTCAAAATCAAAAGGATAAAATGTATGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATTTGATTCAAGACTTCTGTAGCCACGTCGGAGTCGACAGAGGCGTTCTCAAAGTCTGGATGCATAACAACAAGAACACTCTCTGTAAAAAAGACGGCGCCCAAAACATCAACGGCCACGGCGATGGAGACGACGACACAAAAATTAACGGCGGCGGCGCAAATGGGTCATCATCTTCCTCTTGA 864 53.47 MDLIPAISTAAAAITTGGGGAVKSPEFDAETPIKFQPTTKSHSFTNGVLKRHHHTPPPPPSLVYKECLKNHAASMGGHALDGCGEFMPSPTATTTDPTSFKCVACGCHRNFHRREPEDTIATPTTTHVIEYQPHHRHHPPPPPAHRSPNSASPPPISSSYYPSAPHMLLALSGSMTENAGGGFHHSILTPSSNSRKRFRTKFTQNQKDKMYEFAEKVGWKIQKRDEDLIQDFCSHVGVDRGVLKVWMHNNKNTLCKKDGAQNINGHGDGDDDTKINGGGANGSSSSS 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5821076 5821939 + CmoCh11G010470.1 Cmo11g01047 391666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01047 287 MobiDBLite consensus disorder prediction 132 159 - -
Cmo11g01047 287 SUPERFAMILY Homeodomain-like 189 254 IPR009057 -
Cmo11g01047 287 MobiDBLite consensus disorder prediction 259 287 - -
Cmo11g01047 287 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 266 - -
Cmo11g01047 287 Gene3D - 187 256 - -
Cmo11g01047 287 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Cmo11g01047 287 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 195 252 IPR006455 -
Cmo11g01047 287 Pfam ZF-HD protein dimerisation region 63 116 IPR006456 -
Cmo11g01047 287 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Cmo11g01047 287 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 12 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01047 Cmo-Chr11:5821076 Cmo15g00285 Cmo-Chr15:1345770 5.87E-83 dispersed
Cmo11g01047 Cmo-Chr11:5821076 Cmo14g00601 Cmo-Chr14:3042234 1.87E-144 wgd
Cmo11g01047 Cmo-Chr11:5821076 Cmo04g02895 Cmo-Chr4:20605577 1.63E-80 wgd
Cmo11g01047 Cmo-Chr11:5821076 Cmo04g01734 Cmo-Chr4:8784011 3.90E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10599 PF04770 ZF-HD_dimer 6.80E-28 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01047 - - csv:101204974 433.335