Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01062 ATGGAGGCGCCAGCTTTGATTCTGAAGAACGAGGAGAATCTAAGAATATGTTGGACGGAAGGCCAAGTTCCGGCCACCAGGCGTGTCAAGAGACGGCGGAGAGATCCCTCCACTGCCTCTGCCATCGATCAAACTAATAATAAGCAGCAATCCGATCAAGCTCCGACCACCACTACGAAGCGGAGCTCAAGATTTCGCGGCGTCAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAGCTTTCTTGGAACTTGACACAAAAGAAGAAGGGTAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCGTATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACAATCACTAATTTTCAGATATCAGATTATGAGAAGGAGATTGAGATGATGCAGACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGTGTGTCAAAATATAGAGGAGTGGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTACCTCTACCTTGGAACTTATGGCACTCAAGAGGAAGCTGCTCGAGCTTACGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTTACCAACTTCGACTGGAGCAATTACATGGCCTGGCTGAAACCTCCGCTGCCACCCGTCGCGACCCCGAACGAATCCCATATGACATCAGACCCTCTCAAGGAGCTCTGCAACTCCAGCTCCATCATCCCAGCAGAAGAAACTTCCCTTTTCCAAAACCATCACTACCACGACAATTCCTTCCATTCTCTTCAAAAGCAAGAGCTTCTTCATAAAAGCTGCAGCATTCCTCTCAACAGTTATGTTAAATCTTCTCCATCAGCTCTCAACCTCCTTCTTCGATCTTCATTTTTCAAGAAACTCGTCGAGACCAACTCCAACCTTTCGGTGGATGAGGCTGATAATGGAGAAGAGGCGAAGACTCGAGCTGTGCTTGACAATGTGTTTGATGAATTTGGAGATGTCTTCTGTGATAGACTTACAGATGAAACGTTTGTTTGCAGCTCCGACAAAGAGCTGCAAGAAAGTGATCTTCATTCGTTCTTAAATGGCTCATTTCATCGCTTCAAAGCACCCTGA 1167 46.1 MEAPALILKNEENLRICWTEGQVPATRRVKRRRRDPSTASAIDQTNNKQQSDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNLTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFQISDYEKEIEMMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPLPPVATPNESHMTSDPLKELCNSSSIIPAEETSLFQNHHYHDNSFHSLQKQELLHKSCSIPLNSYVKSSPSALNLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRAVLDNVFDEFGDVFCDRLTDETFVCSSDKELQESDLHSFLNGSFHRFKAP 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5906644 5908703 - CmoCh11G010620.1 Cmo11g01062 391681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01062 388 CDD AP2 63 129 IPR001471 GO:0003700|GO:0006355
Cmo11g01062 388 CDD AP2 162 223 IPR001471 GO:0003700|GO:0006355
Cmo11g01062 388 SUPERFAMILY DNA-binding domain 162 223 IPR016177 GO:0003677
Cmo11g01062 388 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 372 - -
Cmo11g01062 388 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 12 372 - -
Cmo11g01062 388 SUPERFAMILY DNA-binding domain 63 128 IPR016177 GO:0003677
Cmo11g01062 388 MobiDBLite consensus disorder prediction 39 63 - -
Cmo11g01062 388 SMART rav1_2 64 133 IPR001471 GO:0003700|GO:0006355
Cmo11g01062 388 SMART rav1_2 163 227 IPR001471 GO:0003700|GO:0006355
Cmo11g01062 388 MobiDBLite consensus disorder prediction 26 65 - -
Cmo11g01062 388 Pfam AP2 domain 63 119 IPR001471 GO:0003700|GO:0006355
Cmo11g01062 388 Pfam AP2 domain 162 213 IPR001471 GO:0003700|GO:0006355
Cmo11g01062 388 ProSiteProfiles AP2/ERF domain profile. 163 221 IPR001471 GO:0003700|GO:0006355
Cmo11g01062 388 ProSiteProfiles AP2/ERF domain profile. 64 127 IPR001471 GO:0003700|GO:0006355
Cmo11g01062 388 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Cmo11g01062 388 PRINTS Ethylene responsive element binding protein signature 203 223 IPR001471 GO:0003700|GO:0006355
Cmo11g01062 388 Gene3D AP2/ERF domain 162 222 IPR036955 GO:0003700|GO:0006355
Cmo11g01062 388 Gene3D AP2/ERF domain 63 129 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01062 Cmo14g00612 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01062 Cmo-Chr11:5906644 Cmo14g00612 Cmo-Chr14:3097890 0 dispersed
Cmo11g01062 Cmo-Chr11:5906644 Cmo04g01529 Cmo-Chr4:7814003 2.84E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10601 PF00847 AP2 6.00E-09 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01062 - - csv:101210782 642.499