Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01064 ATGGCTGGCTGCTGGTTTAAGGTTTTGATGGTTCTGCTGCTTTCAATGGCTGTTCTTATGCCAACTATCCGAGCTGGCATTGCTGAATATGATGACTTTTTGCTCAAGAAGGCTGTTGCAGCCGAACAAGTGGCTCAGGAGGCCTACAACCCCGACCCCATGAATGTCACTAACCATCTCAACCTTCAAGTTCATTTAGCTTTTGAGGGAAGCAATAGCACAAGGAGGGGCTTAGCCAAATACAAGGGACCATGTTTGGCGACAAACCCGATCGACCGATGTTGGAGATGCAACAAAAAATGGGCCAAAAACCGCAAGAAGCTAGCCTCTTGTGTCCTTGGTTTTGGCCGAAAAACCACCGGTGGCAAAAGAGGCCGTTACTACAAAGTAACCGACCCATCAGACACCGAATTCGTAGACCCTAAACCCGGAACCCTAAGACACGCATGCATTCAAAAACGACCATTATGGATCACATTTGGCCGTAGCATGATTATCAAGCTATCAAAAGAGCTATTAATATCAAGTCACAAGACCATCGATGCACGAGGTGCCAATGTCCATATAGCCTATGGTGCTGGTCTAAGCATTCAATTCTCCCGCAATGTAATCATCCACGGCCTACACATCCACCACATCGTGGCAGCCAATGGTGGCATGATCCGTGACGCATACAACCATGTGGGCCTACGAACCGTCAGCGATGGCGATGGCATATCAATCTTTGGGTCATCCAACATTTGGCTGGACCATCTCTCCATGTCAAACTGCCAAGATGGGCTCATAGACGCAATCCAAGGCTCCACAGCTATCACAGTCTCAAACTCCCATTTCACGCATCATAACGACGTGATGCTGTTTGGTGCAAGTGATTCATATCAAGGGGACTCCATCATGCAAGTGACCGTGGCATTTAACCATTTTGGTAAAGGGTTGGTGCAGCGAATGCCAAGGTGCCGATGGGGGTTCTTCCATGTGGTTAATAATGACTATACTCATTGGTTGATGTATGCAATTGGTGGGAGCCAACATCCAACGATTATAAGCCAAGGGAATAGGTTCATAGCGCCGCCAAACCCGGCTGCTAGGCAGATAACCAACAGGAACTATGCGCCGGAGAGTGTATGGAAGACGTGGACGTGGAGGTCGGAAGGGGACTTGTTGATGAATGGGGCTTATTTTGTTCAGTCGGGGAGTCCGAGTAAGCGAAGGCCGTACAGCAGGTTGGACATGATCAAGGCTAAGCCTGGGACTTATGTTAGAAGGCTTACGCGCTTTGCGGGGTCGCTGAATTGCTATGAGGGGCGCCCATGCTAA 1317 49.05 MAGCWFKVLMVLLLSMAVLMPTIRAGIAEYDDFLLKKAVAAEQVAQEAYNPDPMNVTNHLNLQVHLAFEGSNSTRRGLAKYKGPCLATNPIDRCWRCNKKWAKNRKKLASCVLGFGRKTTGGKRGRYYKVTDPSDTEFVDPKPGTLRHACIQKRPLWITFGRSMIIKLSKELLISSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHIVAANGGMIRDAYNHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWKTWTWRSEGDLLMNGAYFVQSGSPSKRRPYSRLDMIKAKPGTYVRRLTRFAGSLNCYEGRPC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5919240 5921088 - CmoCh11G010640.1 Cmo11g01064 391683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01064 438 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Cmo11g01064 438 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Cmo11g01064 438 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Cmo11g01064 438 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Cmo11g01064 438 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Cmo11g01064 438 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Cmo11g01064 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Cmo11g01064 438 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Cmo11g01064 438 SUPERFAMILY Pectin lyase-like 89 428 IPR011050 -
Cmo11g01064 438 PANTHER PECTATE LYASE 18-RELATED 7 438 IPR045032 GO:0030570
Cmo11g01064 438 PANTHER PECTATE LYASE 7 438 - -
Cmo11g01064 438 Gene3D - 88 431 IPR012334 -
Cmo11g01064 438 Pfam Pectate lyase 174 354 IPR002022 -
Cmo11g01064 438 Pfam Pectate lyase, N terminus 27 78 IPR007524 GO:0030570
Cmo11g01064 438 SMART amb_all 163 360 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01064 Cmo14g00614 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01064 Cmo-Chr11:5919240 Cmo14g00614 Cmo-Chr14:3100858 0 dispersed
Cmo05g00962 Cmo-Chr5:7722814 Cmo11g01064 Cmo-Chr11:5919240 0 transposed
Cmo11g01064 Cmo-Chr11:5919240 Cmo04g01712 Cmo-Chr4:8678089 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01064 K01728 - csv:101202789 750.74