Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01064 | ATGGCTGGCTGCTGGTTTAAGGTTTTGATGGTTCTGCTGCTTTCAATGGCTGTTCTTATGCCAACTATCCGAGCTGGCATTGCTGAATATGATGACTTTTTGCTCAAGAAGGCTGTTGCAGCCGAACAAGTGGCTCAGGAGGCCTACAACCCCGACCCCATGAATGTCACTAACCATCTCAACCTTCAAGTTCATTTAGCTTTTGAGGGAAGCAATAGCACAAGGAGGGGCTTAGCCAAATACAAGGGACCATGTTTGGCGACAAACCCGATCGACCGATGTTGGAGATGCAACAAAAAATGGGCCAAAAACCGCAAGAAGCTAGCCTCTTGTGTCCTTGGTTTTGGCCGAAAAACCACCGGTGGCAAAAGAGGCCGTTACTACAAAGTAACCGACCCATCAGACACCGAATTCGTAGACCCTAAACCCGGAACCCTAAGACACGCATGCATTCAAAAACGACCATTATGGATCACATTTGGCCGTAGCATGATTATCAAGCTATCAAAAGAGCTATTAATATCAAGTCACAAGACCATCGATGCACGAGGTGCCAATGTCCATATAGCCTATGGTGCTGGTCTAAGCATTCAATTCTCCCGCAATGTAATCATCCACGGCCTACACATCCACCACATCGTGGCAGCCAATGGTGGCATGATCCGTGACGCATACAACCATGTGGGCCTACGAACCGTCAGCGATGGCGATGGCATATCAATCTTTGGGTCATCCAACATTTGGCTGGACCATCTCTCCATGTCAAACTGCCAAGATGGGCTCATAGACGCAATCCAAGGCTCCACAGCTATCACAGTCTCAAACTCCCATTTCACGCATCATAACGACGTGATGCTGTTTGGTGCAAGTGATTCATATCAAGGGGACTCCATCATGCAAGTGACCGTGGCATTTAACCATTTTGGTAAAGGGTTGGTGCAGCGAATGCCAAGGTGCCGATGGGGGTTCTTCCATGTGGTTAATAATGACTATACTCATTGGTTGATGTATGCAATTGGTGGGAGCCAACATCCAACGATTATAAGCCAAGGGAATAGGTTCATAGCGCCGCCAAACCCGGCTGCTAGGCAGATAACCAACAGGAACTATGCGCCGGAGAGTGTATGGAAGACGTGGACGTGGAGGTCGGAAGGGGACTTGTTGATGAATGGGGCTTATTTTGTTCAGTCGGGGAGTCCGAGTAAGCGAAGGCCGTACAGCAGGTTGGACATGATCAAGGCTAAGCCTGGGACTTATGTTAGAAGGCTTACGCGCTTTGCGGGGTCGCTGAATTGCTATGAGGGGCGCCCATGCTAA | 1317 | 49.05 | MAGCWFKVLMVLLLSMAVLMPTIRAGIAEYDDFLLKKAVAAEQVAQEAYNPDPMNVTNHLNLQVHLAFEGSNSTRRGLAKYKGPCLATNPIDRCWRCNKKWAKNRKKLASCVLGFGRKTTGGKRGRYYKVTDPSDTEFVDPKPGTLRHACIQKRPLWITFGRSMIIKLSKELLISSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHIVAANGGMIRDAYNHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWKTWTWRSEGDLLMNGAYFVQSGSPSKRRPYSRLDMIKAKPGTYVRRLTRFAGSLNCYEGRPC | 438 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5919240 | 5921088 | - | CmoCh11G010640.1 | Cmo11g01064 | 391683 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01064 | 438 | PRINTS | Pollen allergen Amb family signature | 379 | 403 | IPR018082 | - | |
Cmo11g01064 | 438 | PRINTS | Pollen allergen Amb family signature | 171 | 187 | IPR018082 | - | |
Cmo11g01064 | 438 | PRINTS | Pollen allergen Amb family signature | 111 | 128 | IPR018082 | - | |
Cmo11g01064 | 438 | PRINTS | Pollen allergen Amb family signature | 315 | 334 | IPR018082 | - | |
Cmo11g01064 | 438 | PRINTS | Pollen allergen Amb family signature | 337 | 356 | IPR018082 | - | |
Cmo11g01064 | 438 | PRINTS | Pollen allergen Amb family signature | 135 | 160 | IPR018082 | - | |
Cmo11g01064 | 438 | PRINTS | Pollen allergen Amb family signature | 409 | 432 | IPR018082 | - | |
Cmo11g01064 | 438 | PRINTS | Pollen allergen Amb family signature | 235 | 256 | IPR018082 | - | |
Cmo11g01064 | 438 | SUPERFAMILY | Pectin lyase-like | 89 | 428 | IPR011050 | - | |
Cmo11g01064 | 438 | PANTHER | PECTATE LYASE 18-RELATED | 7 | 438 | IPR045032 | GO:0030570 | |
Cmo11g01064 | 438 | PANTHER | PECTATE LYASE | 7 | 438 | - | - | |
Cmo11g01064 | 438 | Gene3D | - | 88 | 431 | IPR012334 | - | |
Cmo11g01064 | 438 | Pfam | Pectate lyase | 174 | 354 | IPR002022 | - | |
Cmo11g01064 | 438 | Pfam | Pectate lyase, N terminus | 27 | 78 | IPR007524 | GO:0030570 | |
Cmo11g01064 | 438 | SMART | amb_all | 163 | 360 | IPR002022 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01064 | Cmo14g00614 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01064 | Cmo-Chr11:5919240 | Cmo14g00614 | Cmo-Chr14:3100858 | 0 | dispersed | |
Cmo05g00962 | Cmo-Chr5:7722814 | Cmo11g01064 | Cmo-Chr11:5919240 | 0 | transposed | |
Cmo11g01064 | Cmo-Chr11:5919240 | Cmo04g01712 | Cmo-Chr4:8678089 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01064 | K01728 | - | csv:101202789 | 750.74 |