Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01074 ATGTTCGATTGTGGTGGATACAAGTCGCAGTACATAGGTGGTCACAAGGAGAAATTCGTGAGGTTGGATGAGTTGGATTCAAATTTGTCAGCATCCTCTGAATCAAGCAAGATGAAGAAATGCCGATTCAACCTAGAAAGCCTCCCACTGCCATTCATTAGCCGATCGAATCCTCGAAACGCGTCGCAATCGTTCCGTAGGGGAGTACAAATGAGCTCTGACGGAATTCTAACCCTAGGCCGCTCGCTCCACTCTAGCGTGTCCAAAGTCATTTTCCCTGAGGACCTGAAAGTGTCAGAGCAGAAAATCTTCGATCCGCAGGACAAATCGCTTCTCTTCTGGAACAAGCTATTCGTCCTGTGCTGTATTCTCGCCGTCTCCATCGATCCTCTGTTCTTCTACCTCCCTGTGTTCAACCACGCCTCTTACTGCCTCGGAATGGACACTCAGCTTGCCGTCACGACCACCACCGCCCGTACGGCCGTCGACCTGTTCTACTTGATTCGGATGGCGTTCCAGTTCCGGACGGCTTACATTGCGCCATCGTCAAGGGTGTTTGGCCGCGGCGAACTTGTGATCGATCCGGCAGAGATCGCCAAGCGGTATCTTCAGCGCTATTTCATTGCCGATTTCCTCGCTGTTCTTCCTTTTCCTCAGGTTGTGGTGTGGAGATTTCTTCACAGGTCAAAAGGTTCAGAGGTGTTGGCAACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTACATTCCCAGATTTGTTAGGTTTATACCTTTGAACATAGAACTTAAGAAGACCGCAGGTGTTTTTGCTGAAAGCGCCTGGGCTGGTGCTGCTTACTATCTCCTCTTGTACATGCTCGCCAGTCATATAGCGGGAGCGTTCTGGTACTTGCTGGCAGTGGAGAGGAACGACGCATGTTGGAGACAAGCGTGCAGAAGCAGTGGGAAGTGCAACATAAACTTCCTGTACTGCGGAAATAAGCACATGCCTGGGTATAAGGAGTGGAAAGTTATTAGTGTTGGTATTCTCAGAAGGAAATGCACAGCCATTGGAGATAATTTGCCATTCAACTATGGCATTTACACACAGGCTATTGCCTCTGGCATTGTTCAGTCCAGGACTTTCTTCTCCAAGTTCTGCTACTGCTTGTGGTGGGGCTTGCAAAATTTGAGAATGAGGAACGAGAAATCTATGTGTGCTGACTTATTCCCTGAAAGGGATTTCTCGACATTGATCCCGATTCCTCATAATGGAGAATGGAGTAGGGACAAGGAGAAAAAAAATAAAAATACGCTTGGCCAGGGACTGCTCACCAGTACCTATCCAGGGGAGGTTATCTTTTCCATACTAATTGCAATTTCTGGGCTCATCCTTTTTGCACTCTTGATTGGAAACATGCAAACGTACCTTCAATCTCTAACCGTTCGCCTTGAGGAGATGCGCATCAAAAGGCGAGACTCGGAGCAGTGGATGCACCATCGGTTGCTTCCCCCGGACTTGAGAGAAAAAGTTAGGCGCTATGATCAATACAAATGGCTTGAAACTAGAGGAGTGGATGAAGAGAGCTTGGTTCAAAGTCTTCCAAAGGACCTTAGGAGAGACATTAAACGCCATCTCTGTCTCAATTTGGTTAGAAGGGTCCCTTTGTTTGCGAACATGGACGAACGGCTTCTAGATGCAATATGCGAGAGGCTAAAGCCAACACTATACACACAGAACACATACATAGTCAGAGAAGGCGACCCAGTTGACGAAATGCTATTCATAATCCGTGGCCGCCTCGAGAGCGTCACCACCGACGGCGGTCGGAGTGGCTTTTTCAACCGTGGCGTTTTGAAAGAAGGCGACTTCTGCGGTGAGGAGCTTCTGACATGGGCTCTGGACCCCAAGTCCGGCGCCAATCTCCCATCCTCCACTCGCACTGTTCATGCCCTCACCGAGGTTGAAGCCTTCGCCTTGGAGGCGGAAGAGCTCAAGTTCGTGGCCAGCCAGTTCCGACGTCTGCACAGTCGGCAGGTCCAACACACGTTCAGATTCTACTCGCAGCAGTGGCGCACATGGGCGTCTTGTTTTATACAAGCGGCGTGGCGTCGGTATTTGAAAAGGAAGATAGCGGAGCTGCGGCGGAAGGAGGAGGAAGAGGAGGATGCAGCGGCGGCTGCGGCGGCGTATGCGTCGACGAGGCTTGGGGCGACGATTTTGGCGTCGAGATTTGCAGCGAATGCGCTTAGAGGGCATCGGATGAGGAATTTGAGTGGGAGGACCTTGATTAACTTGCAGAAGCCTGCAGAGCCTGATTTTTCTGTGTATAAAGGAGAGTAA 2325 49.81 MFDCGGYKSQYIGGHKEKFVRLDELDSNLSASSESSKMKKCRFNLESLPLPFISRSNPRNASQSFRRGVQMSSDGILTLGRSLHSSVSKVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSIDPLFFYLPVFNHASYCLGMDTQLAVTTTTARTAVDLFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPAEIAKRYLQRYFIADFLAVLPFPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFVRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACRSSGKCNINFLYCGNKHMPGYKEWKVISVGILRRKCTAIGDNLPFNYGIYTQAIASGIVQSRTFFSKFCYCLWWGLQNLRMRNEKSMCADLFPERDFSTLIPIPHNGEWSRDKEKKNKNTLGQGLLTSTYPGEVIFSILIAISGLILFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTQNTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSGANLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYLKRKIAELRRKEEEEEDAAAAAAAYASTRLGATILASRFAANALRGHRMRNLSGRTLINLQKPAEPDFSVYKGE 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6008422 6013551 - CmoCh11G010740.1 Cmo11g01074 391693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01074 774 ProSiteProfiles cAMP/cGMP binding motif profile. 550 680 IPR000595 -
Cmo11g01074 774 Coils Coil 698 721 - -
Cmo11g01074 774 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 428 771 - -
Cmo11g01074 774 Gene3D Helix hairpin bin 477 541 - -
Cmo11g01074 774 SMART cnmp_10 550 681 IPR000595 -
Cmo11g01074 774 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 394 - -
Cmo11g01074 774 SUPERFAMILY Voltage-gated potassium channels 106 390 - -
Cmo11g01074 774 Pfam Cyclic nucleotide-binding domain 571 660 IPR000595 -
Cmo11g01074 774 CDD CAP_ED 550 681 IPR000595 -
Cmo11g01074 774 SUPERFAMILY Voltage-gated potassium channels 432 472 - -
Cmo11g01074 774 Pfam Ion transport protein 113 477 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo11g01074 774 ProSiteProfiles IQ motif profile. 686 715 IPR000048 GO:0005515
Cmo11g01074 774 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 13 394 - -
Cmo11g01074 774 SUPERFAMILY cAMP-binding domain-like 480 670 IPR018490 -
Cmo11g01074 774 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 428 771 - -
Cmo11g01074 774 Gene3D Jelly Rolls 548 668 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01074 Cmo-Chr11:6008422 Cmo12g00862 Cmo-Chr12:7836426 0 dispersed
Cmo11g01074 Cmo-Chr11:6008422 Cmo05g01050 Cmo-Chr5:8475255 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01074 K05391 - csv:101221166 1282.7