Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01086 ATGGATCAACTCAAAATTTCCCAAATGAACTGTTCACAAAGCCGTCCGCCGCACTTCCAGTCGAATTTTCTTGGCGATGATAGTAGAAGAGTTGGCTTACCTCCTAGCCCTAGCTCACCGCAGATCCCACCAATTTCACCGTACTCTCAGATCCCGATCGCGCGTCCGATGAACCAGCAACGTTATAACCTAGTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCCTTTTTCTCTTTCGATTCTTTGCCTCCTTTTAGCCCGTCTTCATTTCGTGAGTCCCCGACTACATCGAATTCAGATCAGGTTTCTGCAGACACATCAATGGAGGATAGGGATAACAGTTCAAATTCTTTGTTGCCTCCCTCACCTTATACGATAGCGAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATCCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCCTCTCCCATTCAGTAGCTCTAGTGGATTGGAGCGATCAACAAGTAGTAAAGGGAATGCTGGCATGTTAAAGCCGGCCAGCCAGTTTCTTAAAAGAGAACCTAATTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAAAGGGTGAGAAGAAATCCGATGGGGACAGTGTGGATGACTTATTTTCTGCTTACATGAATTTGGATAATATTGATTTTTTCCACTCTTCTGGGACCAACGGTAAGAATGTTCATGAAAATCAGGAGGATTTGGATAGCAGGGGTAGTGGAACAAAGACAAATGGGGGTGACAGCAGCGATAATGAAGCAGAAAGCAGTGTAAATGAAAGTGGGGATAACAATCAAATGCCTGGATTGAATTCGTCCGGTGAGAAGAGGGAAGGGATCAAACGGACTGCGGGGGGAGATATTGCTCGAACTACCAGACATTACCGTAGTGTCTCCATGGATAGTTTTATGGACAAGTTGCAGTTTGGTGACGAGTCGCCCAAAATGCCTCCTACACCACCTGCTGTTCGCCCCGGACAACTTTCTTCAAACAACCTAGCTAAGGGTAATTCAACTCCGTTCAGCTTGGAGCTTGTTAATAGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAGATTGCACTAGCCGACCCCAAGCGCGTAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGAAAGATGTGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACGCTGTCTGCTCAGCTCACACTTCTACAGAGAGATTCAGTTGGACTTACAAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAACTACGGGATGGTATTGACACTTCTCTTTACTCTTTTCCGATTGTCCATGAGTTGATGCTGTTTGAAACTCTGCCTTAG 1467 44.99 MDQLKISQMNCSQSRPPHFQSNFLGDDSRRVGLPPSPSSPQIPPISPYSQIPIARPMNQQRYNLVPTHSRSLSQPSFFSFDSLPPFSPSSFRESPTTSNSDQVSADTSMEDRDNSSNSLLPPSPYTIANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPPLPFSSSSGLERSTSSKGNAGMLKPASQFLKREPNLEKSVDNNLEGKGEKKSDGDSVDDLFSAYMNLDNIDFFHSSGTNGKNVHENQEDLDSRGSGTKTNGGDSSDNEAESSVNESGDNNQMPGLNSSGEKREGIKRTAGGDIARTTRHYRSVSMDSFMDKLQFGDESPKMPPTPPAVRPGQLSSNNLAKGNSTPFSLELVNSEFSGAELKKIMANDKLAEIALADPKRVKRILANRQSAARSKERKMWYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGIDTSLYSFPIVHELMLFETLP 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6078200 6079966 - CmoCh11G010860.1 Cmo11g01086 391705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01086 488 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 47 472 - -
Cmo11g01086 488 MobiDBLite consensus disorder prediction 255 289 - -
Cmo11g01086 488 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 47 472 - -
Cmo11g01086 488 MobiDBLite consensus disorder prediction 36 50 - -
Cmo11g01086 488 MobiDBLite consensus disorder prediction 88 218 - -
Cmo11g01086 488 MobiDBLite consensus disorder prediction 196 218 - -
Cmo11g01086 488 CDD bZIP_plant_RF2 391 440 IPR044759 GO:0003700|GO:0006355
Cmo11g01086 488 MobiDBLite consensus disorder prediction 292 306 - -
Cmo11g01086 488 MobiDBLite consensus disorder prediction 325 352 - -
Cmo11g01086 488 MobiDBLite consensus disorder prediction 149 184 - -
Cmo11g01086 488 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 388 451 IPR004827 GO:0003700|GO:0006355
Cmo11g01086 488 SMART brlzneu 386 450 IPR004827 GO:0003700|GO:0006355
Cmo11g01086 488 Gene3D - 389 466 - -
Cmo11g01086 488 MobiDBLite consensus disorder prediction 1 21 - -
Cmo11g01086 488 MobiDBLite consensus disorder prediction 88 133 - -
Cmo11g01086 488 MobiDBLite consensus disorder prediction 1 54 - -
Cmo11g01086 488 Pfam bZIP transcription factor 390 444 IPR004827 GO:0003700|GO:0006355
Cmo11g01086 488 SUPERFAMILY Leucine zipper domain 390 446 IPR046347 GO:0003700|GO:0006355
Cmo11g01086 488 Coils Coil 413 461 - -
Cmo11g01086 488 MobiDBLite consensus disorder prediction 240 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01086 Cmo-Chr11:6078200 Cmo19g00713 Cmo-Chr19:7466810 0 dispersed
Cmo11g01086 Cmo-Chr11:6078200 Cmo11g01089 Cmo-Chr11:6085440 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10603 PF00170 bZIP_1 5.80E-09 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01086 - - csv:101216189 721.079