Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01086 | ATGGATCAACTCAAAATTTCCCAAATGAACTGTTCACAAAGCCGTCCGCCGCACTTCCAGTCGAATTTTCTTGGCGATGATAGTAGAAGAGTTGGCTTACCTCCTAGCCCTAGCTCACCGCAGATCCCACCAATTTCACCGTACTCTCAGATCCCGATCGCGCGTCCGATGAACCAGCAACGTTATAACCTAGTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCCTTTTTCTCTTTCGATTCTTTGCCTCCTTTTAGCCCGTCTTCATTTCGTGAGTCCCCGACTACATCGAATTCAGATCAGGTTTCTGCAGACACATCAATGGAGGATAGGGATAACAGTTCAAATTCTTTGTTGCCTCCCTCACCTTATACGATAGCGAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATCCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCCTCTCCCATTCAGTAGCTCTAGTGGATTGGAGCGATCAACAAGTAGTAAAGGGAATGCTGGCATGTTAAAGCCGGCCAGCCAGTTTCTTAAAAGAGAACCTAATTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAAAGGGTGAGAAGAAATCCGATGGGGACAGTGTGGATGACTTATTTTCTGCTTACATGAATTTGGATAATATTGATTTTTTCCACTCTTCTGGGACCAACGGTAAGAATGTTCATGAAAATCAGGAGGATTTGGATAGCAGGGGTAGTGGAACAAAGACAAATGGGGGTGACAGCAGCGATAATGAAGCAGAAAGCAGTGTAAATGAAAGTGGGGATAACAATCAAATGCCTGGATTGAATTCGTCCGGTGAGAAGAGGGAAGGGATCAAACGGACTGCGGGGGGAGATATTGCTCGAACTACCAGACATTACCGTAGTGTCTCCATGGATAGTTTTATGGACAAGTTGCAGTTTGGTGACGAGTCGCCCAAAATGCCTCCTACACCACCTGCTGTTCGCCCCGGACAACTTTCTTCAAACAACCTAGCTAAGGGTAATTCAACTCCGTTCAGCTTGGAGCTTGTTAATAGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAGATTGCACTAGCCGACCCCAAGCGCGTAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGAAAGATGTGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACGCTGTCTGCTCAGCTCACACTTCTACAGAGAGATTCAGTTGGACTTACAAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAACTACGGGATGGTATTGACACTTCTCTTTACTCTTTTCCGATTGTCCATGAGTTGATGCTGTTTGAAACTCTGCCTTAG | 1467 | 44.99 | MDQLKISQMNCSQSRPPHFQSNFLGDDSRRVGLPPSPSSPQIPPISPYSQIPIARPMNQQRYNLVPTHSRSLSQPSFFSFDSLPPFSPSSFRESPTTSNSDQVSADTSMEDRDNSSNSLLPPSPYTIANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPPLPFSSSSGLERSTSSKGNAGMLKPASQFLKREPNLEKSVDNNLEGKGEKKSDGDSVDDLFSAYMNLDNIDFFHSSGTNGKNVHENQEDLDSRGSGTKTNGGDSSDNEAESSVNESGDNNQMPGLNSSGEKREGIKRTAGGDIARTTRHYRSVSMDSFMDKLQFGDESPKMPPTPPAVRPGQLSSNNLAKGNSTPFSLELVNSEFSGAELKKIMANDKLAEIALADPKRVKRILANRQSAARSKERKMWYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGIDTSLYSFPIVHELMLFETLP | 488 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6078200 | 6079966 | - | CmoCh11G010860.1 | Cmo11g01086 | 391705 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01086 | 488 | PANTHER | ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED | 47 | 472 | - | - | |
Cmo11g01086 | 488 | MobiDBLite | consensus disorder prediction | 255 | 289 | - | - | |
Cmo11g01086 | 488 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 47 | 472 | - | - | |
Cmo11g01086 | 488 | MobiDBLite | consensus disorder prediction | 36 | 50 | - | - | |
Cmo11g01086 | 488 | MobiDBLite | consensus disorder prediction | 88 | 218 | - | - | |
Cmo11g01086 | 488 | MobiDBLite | consensus disorder prediction | 196 | 218 | - | - | |
Cmo11g01086 | 488 | CDD | bZIP_plant_RF2 | 391 | 440 | IPR044759 | GO:0003700|GO:0006355 | |
Cmo11g01086 | 488 | MobiDBLite | consensus disorder prediction | 292 | 306 | - | - | |
Cmo11g01086 | 488 | MobiDBLite | consensus disorder prediction | 325 | 352 | - | - | |
Cmo11g01086 | 488 | MobiDBLite | consensus disorder prediction | 149 | 184 | - | - | |
Cmo11g01086 | 488 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 388 | 451 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01086 | 488 | SMART | brlzneu | 386 | 450 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01086 | 488 | Gene3D | - | 389 | 466 | - | - | |
Cmo11g01086 | 488 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cmo11g01086 | 488 | MobiDBLite | consensus disorder prediction | 88 | 133 | - | - | |
Cmo11g01086 | 488 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Cmo11g01086 | 488 | Pfam | bZIP transcription factor | 390 | 444 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01086 | 488 | SUPERFAMILY | Leucine zipper domain | 390 | 446 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo11g01086 | 488 | Coils | Coil | 413 | 461 | - | - | |
Cmo11g01086 | 488 | MobiDBLite | consensus disorder prediction | 240 | 310 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01086 | Cmo-Chr11:6078200 | Cmo19g00713 | Cmo-Chr19:7466810 | 0 | dispersed | |
Cmo11g01086 | Cmo-Chr11:6078200 | Cmo11g01089 | Cmo-Chr11:6085440 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10603 | PF00170 | bZIP_1 | 5.80E-09 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01086 | - | - | csv:101216189 | 721.079 |