Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01089 ATGAGTGATACTGCAGATGCTCATACTGATAACGCACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTGCTACTGTAAATCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTCCACAGCATTTTAAGTCGAATTTTCTTGGAGATAATAATAGAAGAATCGGGATACCGCCTTCTCCCAACTCATCGCAGATCCCTCCAATTTCACCGTACTCTCAGATCCCGATGTCGCGTCCGATGAACCAGCAAAGTTATCATCCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTGCTTTTTTCTCTCTCGATTCTTTGCCTCCTTTAAGCCCGTCCCCGTTTCGTGATTCTCCATCTACATCGAATTCAGATCAGGTTTCTGCAGACACATCAATGGAGGACAGGGATGCCAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGGGCCAACTCTTCTAAGATGGGAGATGCTTTACCCCCTCGCAAGGCCCATAGGCGGTCTAATAGTGATATACCATTTGGATTTTCTTCTATGATTCAGTCATCTCCTCTTCTTCCTTTTAGTGGCTCAGGCGGATTGGAGCGATCAACAACTAGTAAAGAGAATGCCGGCGTGTTTAAGCCGGCGAGCCAGTTTGTTAAAAGAGAACTTAGTTTGGAGAAAAGCACTGACAACAATTTGGAAGGAATGGGTGAAAGGAAGTCCGAAGGGGACACTGTGGATGATTTGTTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAATTCCACAGGGACCAATGACAAGAATGGTCATGAGAATCGAGAGGATTTGGATAGTAGAGGTAGCGGAACGAAGACGGGGGGTGACAGCAGTGATAATGAAGCAGAAAGTAGTGTAAATGAAAGTGGGGATAACAATCAAATGCCTGGCTTGTATTCCTCTGCTGAGAAGAGGGAAGGGGTCAAACGGACTGCAGGGGTAGATATCGCTCCAACTACCCGACATTACCGGAGTGTCTCCATGGATAGTTTTATGGACAAGTTGCAGTTTGGTGACGAGTCGCCCAAAATGCCTCCTACACCGCCTGGCGTTCGTCCAGGGCAACTTTCTTCAAACAACCTAGCTGATGGTAATTCAACTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAGATTGCACTAGCTGACCCCAAGCGTGCAAAGAGTTTACTGAAACAATTTAATCCATTAGTTATTAATCTTGAGGTACTGATTTACTTCAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCGAAAGAACGAAAGATGCGGTATATATCTGAGTTGGAGCACAAGGTTCAGACTCTTCAAACAGAAGCTACCACGCTCTCTGCTCAACTCACGCTTCTACAGGTAGAGGTTTCGAGTGATGAAAATTATTTTCTATTTCCACTTTCCTGTGCCGAACGAGACTCTGTTGGACTTACAAACCAGAACAATGAGTTGAAGTTTCGTCTCCAGGCCATGGAACAGCAAGCACAACTACGGGATGGTATTGACACTTTTTCTCTTAATTTCTTTGCTTCCATGCCTAGTTGA 1650 44.18 MSDTADAHTDNARNLQCSFGTSSSATVNHHFSMDQLKISQMNCSQGRPQHFKSNFLGDNNRRIGIPPSPNSSQIPPISPYSQIPMSRPMNQQSYHPVPTHSRSLSQPAFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYMRANSSKMGDALPPRKAHRRSNSDIPFGFSSMIQSSPLLPFSGSGGLERSTTSKENAGVFKPASQFVKRELSLEKSTDNNLEGMGERKSEGDTVDDLFSAYMNLDNIDLFNSTGTNDKNGHENREDLDSRGSGTKTGGDSSDNEAESSVNESGDNNQMPGLYSSAEKREGVKRTAGVDIAPTTRHYRSVSMDSFMDKLQFGDESPKMPPTPPGVRPGQLSSNNLADGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALADPKRAKSLLKQFNPLVINLEVLIYFRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQVEVSSDENYFLFPLSCAERDSVGLTNQNNELKFRLQAMEQQAQLRDGIDTFSLNFFASMPS 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6085440 6087412 - CmoCh11G010890.1 Cmo11g01089 391708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01089 549 Gene3D - 443 494 - -
Cmo11g01089 549 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 104 536 - -
Cmo11g01089 549 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 104 536 - -
Cmo11g01089 549 MobiDBLite consensus disorder prediction 290 319 - -
Cmo11g01089 549 MobiDBLite consensus disorder prediction 275 289 - -
Cmo11g01089 549 MobiDBLite consensus disorder prediction 356 388 - -
Cmo11g01089 549 Coils Coil 509 529 - -
Cmo11g01089 549 SUPERFAMILY Leucine zipper domain 444 490 IPR046347 GO:0003700|GO:0006355
Cmo11g01089 549 MobiDBLite consensus disorder prediction 54 102 - -
Cmo11g01089 549 MobiDBLite consensus disorder prediction 115 183 - -
Cmo11g01089 549 Coils Coil 456 483 - -
Cmo11g01089 549 MobiDBLite consensus disorder prediction 268 336 - -
Cmo11g01089 549 SMART brlzneu 437 500 IPR004827 GO:0003700|GO:0006355
Cmo11g01089 549 MobiDBLite consensus disorder prediction 228 249 - -
Cmo11g01089 549 MobiDBLite consensus disorder prediction 373 388 - -
Cmo11g01089 549 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 444 492 IPR004827 GO:0003700|GO:0006355
Cmo11g01089 549 Pfam bZIP transcription factor 445 492 IPR004827 GO:0003700|GO:0006355
Cmo11g01089 549 MobiDBLite consensus disorder prediction 75 102 - -
Cmo11g01089 549 CDD bZIP_plant_RF2 444 490 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01089 Cmo-Chr11:6085440 Cmo19g00713 Cmo-Chr19:7466810 0 dispersed
Cmo11g01086 Cmo-Chr11:6078200 Cmo11g01089 Cmo-Chr11:6085440 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10604 PF00170 bZIP_1 6.30E-08 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01089 - - bhj:120077916 814.683