Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01089 | ATGAGTGATACTGCAGATGCTCATACTGATAACGCACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTGCTACTGTAAATCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTCCACAGCATTTTAAGTCGAATTTTCTTGGAGATAATAATAGAAGAATCGGGATACCGCCTTCTCCCAACTCATCGCAGATCCCTCCAATTTCACCGTACTCTCAGATCCCGATGTCGCGTCCGATGAACCAGCAAAGTTATCATCCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTGCTTTTTTCTCTCTCGATTCTTTGCCTCCTTTAAGCCCGTCCCCGTTTCGTGATTCTCCATCTACATCGAATTCAGATCAGGTTTCTGCAGACACATCAATGGAGGACAGGGATGCCAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGGGCCAACTCTTCTAAGATGGGAGATGCTTTACCCCCTCGCAAGGCCCATAGGCGGTCTAATAGTGATATACCATTTGGATTTTCTTCTATGATTCAGTCATCTCCTCTTCTTCCTTTTAGTGGCTCAGGCGGATTGGAGCGATCAACAACTAGTAAAGAGAATGCCGGCGTGTTTAAGCCGGCGAGCCAGTTTGTTAAAAGAGAACTTAGTTTGGAGAAAAGCACTGACAACAATTTGGAAGGAATGGGTGAAAGGAAGTCCGAAGGGGACACTGTGGATGATTTGTTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAATTCCACAGGGACCAATGACAAGAATGGTCATGAGAATCGAGAGGATTTGGATAGTAGAGGTAGCGGAACGAAGACGGGGGGTGACAGCAGTGATAATGAAGCAGAAAGTAGTGTAAATGAAAGTGGGGATAACAATCAAATGCCTGGCTTGTATTCCTCTGCTGAGAAGAGGGAAGGGGTCAAACGGACTGCAGGGGTAGATATCGCTCCAACTACCCGACATTACCGGAGTGTCTCCATGGATAGTTTTATGGACAAGTTGCAGTTTGGTGACGAGTCGCCCAAAATGCCTCCTACACCGCCTGGCGTTCGTCCAGGGCAACTTTCTTCAAACAACCTAGCTGATGGTAATTCAACTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAGATTGCACTAGCTGACCCCAAGCGTGCAAAGAGTTTACTGAAACAATTTAATCCATTAGTTATTAATCTTGAGGTACTGATTTACTTCAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCGAAAGAACGAAAGATGCGGTATATATCTGAGTTGGAGCACAAGGTTCAGACTCTTCAAACAGAAGCTACCACGCTCTCTGCTCAACTCACGCTTCTACAGGTAGAGGTTTCGAGTGATGAAAATTATTTTCTATTTCCACTTTCCTGTGCCGAACGAGACTCTGTTGGACTTACAAACCAGAACAATGAGTTGAAGTTTCGTCTCCAGGCCATGGAACAGCAAGCACAACTACGGGATGGTATTGACACTTTTTCTCTTAATTTCTTTGCTTCCATGCCTAGTTGA | 1650 | 44.18 | MSDTADAHTDNARNLQCSFGTSSSATVNHHFSMDQLKISQMNCSQGRPQHFKSNFLGDNNRRIGIPPSPNSSQIPPISPYSQIPMSRPMNQQSYHPVPTHSRSLSQPAFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYMRANSSKMGDALPPRKAHRRSNSDIPFGFSSMIQSSPLLPFSGSGGLERSTTSKENAGVFKPASQFVKRELSLEKSTDNNLEGMGERKSEGDTVDDLFSAYMNLDNIDLFNSTGTNDKNGHENREDLDSRGSGTKTGGDSSDNEAESSVNESGDNNQMPGLYSSAEKREGVKRTAGVDIAPTTRHYRSVSMDSFMDKLQFGDESPKMPPTPPGVRPGQLSSNNLADGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALADPKRAKSLLKQFNPLVINLEVLIYFRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQVEVSSDENYFLFPLSCAERDSVGLTNQNNELKFRLQAMEQQAQLRDGIDTFSLNFFASMPS | 549 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6085440 | 6087412 | - | CmoCh11G010890.1 | Cmo11g01089 | 391708 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01089 | 549 | Gene3D | - | 443 | 494 | - | - | |
Cmo11g01089 | 549 | PANTHER | BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN | 104 | 536 | - | - | |
Cmo11g01089 | 549 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 104 | 536 | - | - | |
Cmo11g01089 | 549 | MobiDBLite | consensus disorder prediction | 290 | 319 | - | - | |
Cmo11g01089 | 549 | MobiDBLite | consensus disorder prediction | 275 | 289 | - | - | |
Cmo11g01089 | 549 | MobiDBLite | consensus disorder prediction | 356 | 388 | - | - | |
Cmo11g01089 | 549 | Coils | Coil | 509 | 529 | - | - | |
Cmo11g01089 | 549 | SUPERFAMILY | Leucine zipper domain | 444 | 490 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo11g01089 | 549 | MobiDBLite | consensus disorder prediction | 54 | 102 | - | - | |
Cmo11g01089 | 549 | MobiDBLite | consensus disorder prediction | 115 | 183 | - | - | |
Cmo11g01089 | 549 | Coils | Coil | 456 | 483 | - | - | |
Cmo11g01089 | 549 | MobiDBLite | consensus disorder prediction | 268 | 336 | - | - | |
Cmo11g01089 | 549 | SMART | brlzneu | 437 | 500 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01089 | 549 | MobiDBLite | consensus disorder prediction | 228 | 249 | - | - | |
Cmo11g01089 | 549 | MobiDBLite | consensus disorder prediction | 373 | 388 | - | - | |
Cmo11g01089 | 549 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 444 | 492 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01089 | 549 | Pfam | bZIP transcription factor | 445 | 492 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01089 | 549 | MobiDBLite | consensus disorder prediction | 75 | 102 | - | - | |
Cmo11g01089 | 549 | CDD | bZIP_plant_RF2 | 444 | 490 | IPR044759 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01089 | Cmo-Chr11:6085440 | Cmo19g00713 | Cmo-Chr19:7466810 | 0 | dispersed | |
Cmo11g01086 | Cmo-Chr11:6078200 | Cmo11g01089 | Cmo-Chr11:6085440 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10604 | PF00170 | bZIP_1 | 6.30E-08 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01089 | - | - | bhj:120077916 | 814.683 |