Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01107 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCGAGATTCTCCCTACTTCAGCCGATCAAAATCGATTCTCCTCTTTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCCATTCTTTGCCGAGAATGCGACATTTCGATTCACGGAACGAACGAACGTACGCAGAAGCACAATCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTCTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACAATGCTGCCATGGATGTTAAAACTCGAAGCTCCCACGCTTGCAGCAAGAGCCCTAAAATGGCCGCGCACGAAACCTCGAGTTCTCCTTCCTCTGAAAAAGCTGCTCCGTCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGAGGTTCGTTCTCGACTAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGTTTAACGGCGAAATTCTGGCAACTGGGAACCAAAATCTGGAGAGGCAACAGGAATCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGGTAAATTTTCTCAAACTGGATTTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGAAAAAATGGCGGTGGCTGATAAGATCATCAGCAACTTTTGCTCTGAAAACAATTCTGGTAAAATCAAAAAACAAACAGAAACTAACTTTTTGTTTGTTGCTGCTGATTTGCATGTTTTACCTTACTCCCACTCTTTAGATTGC 927 46.49 MKIRCDVCDQAEASVFCSADEAALCHGCDLHVHRANKLAGKHSRFSLLQPIKIDSPLCDICQERRALVFCQQDRAILCRECDISIHGTNERTQKHNRFLLTGVKLSSTSFSYQTSSSSNGYNAAMDVKTRSSHACSKSPKMAAHETSSSPSSEKAAPSTSNYKVEDGQASDGGSFSTSSISEYLETLPGWCVEEFLDPSTAAANRFCKFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKTCRGEKMAVADKIISNFCSENNSGKIKKQTETNFLFVAADLHVLPYSHSLDC 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6193606 6195044 - CmoCh11G011070.1 Cmo11g01107 391726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01107 309 Gene3D Classic Zinc Finger 1 100 - -
Cmo11g01107 309 CDD Bbox1_BBX-like 57 100 - -
Cmo11g01107 309 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cmo11g01107 309 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Cmo11g01107 309 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo11g01107 309 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cmo11g01107 309 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cmo11g01107 309 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo11g01107 309 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 223 - -
Cmo11g01107 309 CDD Bbox1_BBX-like 5 47 - -
Cmo11g01107 309 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 223 - -
Cmo11g01107 309 MobiDBLite consensus disorder prediction 134 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02006 Cmo-Chr1:14141132 Cmo11g01107 Cmo-Chr11:6193606 3.20E-51 dispersed
Cmo05g00289 Cmo-Chr5:1251990 Cmo11g01107 Cmo-Chr11:6193606 1.40E-54 dispersed
Cmo11g01107 Cmo-Chr11:6193606 Cmo20g00825 Cmo-Chr20:4095081 9.07E-67 dispersed
Cmo11g01107 Cmo-Chr11:6193606 Cmo12g00380 Cmo-Chr12:2352746 6.78E-55 wgd
Cmo11g01107 Cmo-Chr11:6193606 Cmo19g00699 Cmo-Chr19:7382490 1.81E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10607 PF00643 zf-B_box 6.80E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01107 - - cmax:111469932 564.303