Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cmo11g01110	ATGGAAGCCCCTTCTGGAGCAGCCTCTTCATCATCATCGTCTGTTGAATTCGTGTTTCACGATGATTTAGAGTACGAATTTGTTGAAGAAGTCGAACGCCTTTCGAACTGGGAGTTGCTCGATGCTTCAGATGCGGATTTCGAAATAGATGGAAATGGAGATGAGCAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAAAGTTGCAGCGTTGATGTCCGAGTTCCTAAGGATCTTCGAGGGAAGCGTGTTGTAGCGATGCCGATTTCTTCTCTTGTTGAGGAGCGAATCGATGGTCCCTTCGATGATGTTTATTTGCTTCAGAATCAGGTGGAAAACGGTTTCGCGTACGGCTGTAACGATCTGGAGGAGGATGAATCCGACGACGATGTTGTTGATGATGATGATGATGGCGATGAGTGCGATTTGGACGACGAACTCGTTCCGTGGTCCGTTAGTGACAAACTCGGACGGCAGAGGATGAGGAAATTAGGGAAAAGAGGTTTTACGAGGATGTATAATTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGATTGAAGCACAGTCCTTCATCGCCTGATGATTCGTTCTCTAGTCCCATTGGAAACACCGTTTCGTCCTCAGGCGACGGTTATCGCCGTCGAAGCCGTCGCCGCTCATCTACTCCTTCGGAATTTGCTACACCGCCGCGTCAACGATCTCGACTGGCCTCGTCGGAAACCTCCCCGACGGCTACGGAGCCGCGCTCGCGCCGGCAAGGTGGTGGACGAAGAGCGTCTGGTAGCCGAGCGACTCCGGTGGCTGCTACACCTACTTCAACGGATGATATTCCGCCGTCGACGGAGCCTGGCGATGGTGACGACATGGACGAGGACCATCCGACCTTTGTGTGGGGGACGAGTATTAGTGTTGACGATGTTAAGGGAGCGATTATTCGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACTGAGGGAAAATACGCGGATGCAATCAAGAGGGTTCTTGAAGTTGAAGGGGATTCGCTCCATGTGGATGCGCAGGATGTGTTCAATTACGATGCGGATTTATATACAAAGATGATCGTTCGGCTTCAAGAGACTCCGGATGAGATACCTGAAGGAGGGACACCACATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGCAAAGCCTGGTGACAGGGTTGAGACTTATATTGACTGTCTTCATATAAAGAAGGCTGACAAGTCAAGAATGGTGGCAGAGGACATGATAGAAGTTGAGAACCGGTTGGGAGGAAACATGAATGATATCTCATTTGATGAAGCAAAGGTGGAAGAGTTGAAGGAACTCTCCAAAAAACCTGATATATATGACAGACTAACCAGGTCATTGGCACCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAGTGCCTTGAAGTTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTGTCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACTGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACAGTGTTGGAGAGCGGAGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATCGATGAATTTGACAAAATGTCTGAAAATGCAAGGAGCATGTTGCATGAGGTGATGGAGCAACAAACCGTTTCAATAGCGAAGGCTGGAATTATTGCTTCCCTCAATGCCAGAACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGTCTGTCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCTAGATTTGATTTGATCTATTTAATTCTGGATAAGGCTGATGAGCAAACAGATAGGCGCCTTGCTAAACATATTGTCTCACTACACTTTGACAACCCAGAGGGTATTGAGCAGGATTTCTTGGACCTTCAGACCTTGACTTCATATGTCAGCTATGCTAGGAAAAATATTCACCCGAAATTGTCAGATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAACTGAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTTATAACAGCTACTCCCCGGCAGATCGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGGTTGAAAAGGGCGATGTCCTTGAGGCTTTCCGCCTTCTTGAAGTCGCAATGCAACAGTCTGCAACAGATCATTCTACAGGAACCATTGACATGGATCTGATCACCACGGGAGTATCGGCAAGCGAAAGGATGCGAAGGGAGACTATATTATCGGCAACTCGCAACATTATTATGGAGAAAATGCAGCTCGGAGGACCCTCCATGCGCCTGACAGAGTTACTGGATGAGCTGAAGAAACAGAATCCTGATAATGAAGTCCACCTCAACAATCTTAGGAATGCGGCGTCGACGCTTGCAAGTGAAGGATTTGTAGCAATCCATGGTGATAGCATAAAGAGAATATGA	2649	47.45	MEAPSGAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEEEEEEEGESCSVDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVENGFAYGCNDLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEFATPPRQRSRLASSETSPTATEPRSRRQGGGRRASGSRATPVAATPTSTDDIPPSTEPGDGDDMDEDHPTFVWGTSISVDDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYADAIKRVLEVEGDSLHVDAQDVFNYDADLYTKMIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTAKPGDRVETYIDCLHIKKADKSRMVAEDMIEVENRLGGNMNDISFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFLDLQTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRETILSATRNIIMEKMQLGGPSMRLTELLDELKKQNPDNEVHLNNLRNAASTLASEGFVAIHGDSIKRI	882

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
11	6215415	6223030	+	CmoCh11G011100.1	Cmo11g01110	391729

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cmo11g01110	882	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	488	499	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Cmo11g01110	882	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	634	651	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Cmo11g01110	882	PRINTS	Mini-chromosome maintenance (MCM) protein 4 signature	786	795	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Cmo11g01110	882	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	652	660	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cmo11g01110	882	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	573	587	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cmo11g01110	882	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	513	528	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cmo11g01110	882	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	601	614	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cmo11g01110	882	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	625	637	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cmo11g01110	882	Pfam	MCM N-terminal domain	320	383	IPR027925	-
Cmo11g01110	882	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	378	881	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
Cmo11g01110	882	CDD	MCM4	475	784	-	-
Cmo11g01110	882	PANTHER	DNA REPLICATION LICENSING FACTOR MCM4	275	380	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Cmo11g01110	882	MobiDBLite	consensus disorder prediction	232	259	-	-
Cmo11g01110	882	ProSitePatterns	MCM family signature.	581	589	IPR018525	GO:0003677\|GO:0005524\|GO:0006260
Cmo11g01110	882	SMART	mcm	321	786	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
Cmo11g01110	882	Gene3D	-	791	871	IPR036388	-
Cmo11g01110	882	Gene3D	-	450	790	IPR027417	-
Cmo11g01110	882	MobiDBLite	consensus disorder prediction	42	70	-	-
Cmo11g01110	882	SUPERFAMILY	Nucleic acid-binding proteins	380	418	IPR012340	-
Cmo11g01110	882	Pfam	MCM AAA-lid domain	698	784	IPR041562	-
Cmo11g01110	882	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	275	380	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
Cmo11g01110	882	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	483	798	IPR027417	-
Cmo11g01110	882	MobiDBLite	consensus disorder prediction	179	305	-	-
Cmo11g01110	882	Gene3D	-	273	437	IPR012340	-
Cmo11g01110	882	MobiDBLite	consensus disorder prediction	43	68	-	-
Cmo11g01110	882	PANTHER	DNA REPLICATION LICENSING FACTOR MCM4	378	881	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
Cmo11g01110	882	Coils	Coil	842	862	-	-
Cmo11g01110	882	MobiDBLite	consensus disorder prediction	275	289	-	-
Cmo11g01110	882	Pfam	MCM P-loop domain	460	682	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cmo11g01110	882	ProSiteProfiles	MCM family domain profile.	472	678	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Cmo11g01110	882	MobiDBLite	consensus disorder prediction	120	145	-	-
Cmo11g01110	882	MobiDBLite	consensus disorder prediction	201	220	-	-
Cmo11g01110	882	Pfam	MCM OB domain	380	418	IPR033762	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cmo11g01110	K02212	MCM4, CDC54; DNA replication licensing factor MCM4 [EC:5.6.2.3]	-	csv:101211850	920.228

Dupl-types

Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
Cmo11g01110	Cmo-Chr11:6215415	Cmo17g01008	Cmo-Chr17:8664918	4.54E-100	dispersed
Cmo19g00697	Cmo-Chr19:7369711	Cmo11g01110	Cmo-Chr11:6215415	5.02E-65	transposed
Cmo11g01110	Cmo-Chr11:6215415	Cmo19g00696	Cmo-Chr19:7351871	3.29E-82	wgd

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Cmo09g01339	.	106	797	Core DNA Replication Machinery Family	AT4G14700	66.9	2.2e-270	929.1
Cmo09g01339	.	73	797	Core DNA Replication Machinery Family	AT4G12620	67.4	2.5e-282	968.8
Cmo12g00468	.	2	361	Core DNA Replication Machinery Family	AT2G37560	67.5	7.5e-143	504.2
Cmo02g01001	.	21	361	Core DNA Replication Machinery Family	AT5G16690	54.4	1.5e-100	364.8
Cmo04g01157	.	9	418	Core DNA Replication Machinery Family	AT2G01120	65.5	1.9e-156	549.7
Cmo17g00416	.	3	520	Core DNA Replication Machinery Family	AT4G29910	57.2	1.6e-166	583.6
Cmo05g00872	.	1	183	Core DNA Replication Machinery Family	AT1G26840	70.5	3.6e-66	249.2
Cmo06g01695	.	894	1566	Core DNA Replication Machinery Family	AT1G79150	50.9	9.1e-195	677.9
Cmo14g01078	.	9	939	Core DNA Replication Machinery Family	AT1G44900	75.3	0.0e+00	1339.3
Cmo06g01740	.	1	950	Core DNA Replication Machinery Family	AT1G44900	74.2	0.0e+00	1328.2
Cmo07g00117	CST	1	579	Core DNA Replication Machinery Family	AT5G46280	80.5	3.0e-266	914.8
Cmo03g01381	CST	1	196	Core DNA Replication Machinery Family	AT5G46280	50.6	2.8e-62	237.3
Cmo19g00696	.	1	814	Core DNA Replication Machinery Family	AT2G16440	73.5	0.0e+00	1090.1
Cmo11g01110	.	200	882	Core DNA Replication Machinery Family	AT2G16440	60.2	2.3e-246	849.4
Cmo12g01194	.	951	1685	Core DNA Replication Machinery Family	AT2G07690	78.5	0.0e+00	1115.5
Cmo07g00005	.	528	1322	Core DNA Replication Machinery Family	AT5G44635	70.1	0.0e+00	1120.1
Cmo17g01008	.	8	719	Core DNA Replication Machinery Family	AT4G02060	85.7	0.0e+00	1220.7
Cmo08g00461	.	11	722	Core DNA Replication Machinery Family	AT4G02060	85.5	0.0e+00	1216.4
Cmo20g00379	.	30	518	Core DNA Replication Machinery Family	AT2G29680	60.8	6.6e-164	574.7
Cmo20g00379	.	30	479	Core DNA Replication Machinery Family	AT1G07270	58.7	7.1e-144	508.1
Cmo08g00224	.	222	814	Core DNA Replication Machinery Family	AT3G25100	76.9	8.1e-262	900.2
Cmo17g01242	.	1	593	Core DNA Replication Machinery Family	AT3G25100	76.5	2.7e-257	885.2
Cmo06g00348	.	39	872	Core DNA Replication Machinery Family	AT3G09660	67.5	3.2e-306	1048.1
Cmo19g00482	.	16	686	Core DNA Replication Machinery Family	AT2G14050	64.6	4.4e-245	844.7
Cmo20g00749	.	1	438	Core DNA Replication Machinery Family	AT2G20980	50.9	1.9e-110	396.7
Cmo09g00762	.	7	968	Core DNA Replication Machinery Family	AT1G77320	50.4	1.3e-259	893.6
Cmo08g00638	.	1	200	Core DNA Replication Machinery Family	AT1G80190	66.8	2.3e-75	279.3
Cmo07g01233	.	1	179	Core DNA Replication Machinery Family	AT3G12530	58.7	6.7e-56	214.2
Cmo04g03028	.	1	184	Core DNA Replication Machinery Family	AT1G19080	64.7	1.1e-63	240.4
Cmo04g03028	.	1	184	Core DNA Replication Machinery Family	AT3G55490	64.7	1.1e-63	240.4
Cmo14g02113	.	15	164	Core DNA Replication Machinery Family	AT5G49010	66.7	5.8e-52	201.4
Cmo02g00525	.	1	1546	Core DNA Replication Machinery Family	AT5G67100	60.4	0.0e+00	1768.4
Cmo18g00706	.	2	610	Core DNA Replication Machinery Family	AT1G67630	63.9	1.6e-220	763.1
Cmo08g00172	.	1	447	Core DNA Replication Machinery Family	AT1G67320	65.7	2.3e-185	646.0
Cmo09g01248	.	1	450	Core DNA Replication Machinery Family	AT5G41880	64.6	2.1e-177	619.4
Cmo07g00846	.	1	1086	Core DNA Replication Machinery Family	AT5G63960	81.1	0.0e+00	1808.1
Cmo14g00422	.	1	438	Core DNA Replication Machinery Family	AT2G42120	76.5	4.2e-207	718.0
Cmo08g00172	.	1	447	Core DNA Replication Machinery Family	AT1G67320	65.7	2.3e-185	646.0
Cmo02g01374	.	1	2094	Core DNA Replication Machinery Family	AT1G08260	70.5	0.0e+00	2952.9
Cmo02g01374	.	9	2200	Core DNA Replication Machinery Family	AT2G27120	67.4	0.0e+00	2919.8
Cmo01g00788	.	510	1031	Core DNA Replication Machinery Family	AT5G22110	65.4	8.1e-191	664.1
Cmo02g01336	.	1	928	Core DNA Replication Machinery Family	AT5G22010	62.5	2.2e-303	1038.9
Cmo16g01059	.	3	332	Core DNA Replication Machinery Family	AT1G63160	89.7	1.4e-170	596.3
Cmo03g00225	.	1	354	Core DNA Replication Machinery Family	AT5G27740	83.3	2.4e-176	615.5
Cmo01g01421	.	1	336	Core DNA Replication Machinery Family	AT1G21690	80.1	1.6e-150	529.6
Cmo15g00675	CST	1	363	Core DNA Replication Machinery Family	AT1G77470	76.3	7.0e-155	544.3
Cmo04g02487	CST	1	382	Core DNA Replication Machinery Family	AT1G77470	70.5	9.2e-147	517.3
Cmo05g01408	.	26	618	Core DNA Replication Machinery Family	AT2G06510	69.0	1.2e-252	869.8
Cmo06g00609	CST	34	701	Core DNA Replication Machinery Family	AT2G06510	52.1	1.3e-201	700.3
Cmo16g01260	CST	34	686	Core DNA Replication Machinery Family	AT2G06510	52.2	5.4e-200	694.9
Cmo11g00212	.	1	623	Core DNA Replication Machinery Family	AT5G08020	67.1	1.5e-242	836.3
Cmo06g00609	CST	10	808	Core DNA Replication Machinery Family	AT5G45400	51.6	2.4e-230	796.2
Cmo16g01260	CST	10	785	Core DNA Replication Machinery Family	AT5G45400	51.4	3.3e-224	775.8
Cmo11g00212	.	1	618	Core DNA Replication Machinery Family	AT5G61000	65.0	2.3e-235	812.4
Cmo06g00609	CST	5	822	Core DNA Replication Machinery Family	AT4G19130	53.3	7.5e-231	797.7
Cmo16g01260	CST	5	772	Core DNA Replication Machinery Family	AT4G19130	54.8	1.3e-227	786.9
Cmo09g00511	CST	1	268	Core DNA Replication Machinery Family	AT2G24490	50.2	1.2e-69	260.8
Cmo01g01597	CST	1	167	Core DNA Replication Machinery Family	AT2G24490	52.2	3.4e-45	179.5
Cmo11g01256	.	1	172	Core DNA Replication Machinery Family	AT5G26680	91.9	4.6e-86	315.8
Cmo11g01257	.	18	183	Core DNA Replication Machinery Family	AT5G26680	59.5	5.3e-58	222.6
Cmo14g01511	CST	1	262	Core DNA Replication Machinery Family	AT2G25100	66.0	7.0e-99	357.8
Cmo20g00553	.	44	804	Core DNA Replication Machinery Family	AT1G08130	68.0	2.9e-291	998.4
Cmo20g00553	.	204	804	Core DNA Replication Machinery Family	AT1G49250	68.6	9.6e-240	827.0

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0007588	1	2	1	1	1	1	3	1	1	1	1	1	2	1	1	2	1	1	2	1	1	1	1	1	1	1	1	1	1	1	36

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Cmo11g01110	Cmo_Chr11	FPKM	18.304993	19.10536	10.939706	12.43497	8.208768	8.006465	7.973754	3.156153	3.906467	4.262664