Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01110 ATGGAAGCCCCTTCTGGAGCAGCCTCTTCATCATCATCGTCTGTTGAATTCGTGTTTCACGATGATTTAGAGTACGAATTTGTTGAAGAAGTCGAACGCCTTTCGAACTGGGAGTTGCTCGATGCTTCAGATGCGGATTTCGAAATAGATGGAAATGGAGATGAGCAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAAAGTTGCAGCGTTGATGTCCGAGTTCCTAAGGATCTTCGAGGGAAGCGTGTTGTAGCGATGCCGATTTCTTCTCTTGTTGAGGAGCGAATCGATGGTCCCTTCGATGATGTTTATTTGCTTCAGAATCAGGTGGAAAACGGTTTCGCGTACGGCTGTAACGATCTGGAGGAGGATGAATCCGACGACGATGTTGTTGATGATGATGATGATGGCGATGAGTGCGATTTGGACGACGAACTCGTTCCGTGGTCCGTTAGTGACAAACTCGGACGGCAGAGGATGAGGAAATTAGGGAAAAGAGGTTTTACGAGGATGTATAATTCGAAGAGATCGCCGTTTTTGTTCACCAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGATTGAAGCACAGTCCTTCATCGCCTGATGATTCGTTCTCTAGTCCCATTGGAAACACCGTTTCGTCCTCAGGCGACGGTTATCGCCGTCGAAGCCGTCGCCGCTCATCTACTCCTTCGGAATTTGCTACACCGCCGCGTCAACGATCTCGACTGGCCTCGTCGGAAACCTCCCCGACGGCTACGGAGCCGCGCTCGCGCCGGCAAGGTGGTGGACGAAGAGCGTCTGGTAGCCGAGCGACTCCGGTGGCTGCTACACCTACTTCAACGGATGATATTCCGCCGTCGACGGAGCCTGGCGATGGTGACGACATGGACGAGGACCATCCGACCTTTGTGTGGGGGACGAGTATTAGTGTTGACGATGTTAAGGGAGCGATTATTCGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACTGAGGGAAAATACGCGGATGCAATCAAGAGGGTTCTTGAAGTTGAAGGGGATTCGCTCCATGTGGATGCGCAGGATGTGTTCAATTACGATGCGGATTTATATACAAAGATGATCGTTCGGCTTCAAGAGACTCCGGATGAGATACCTGAAGGAGGGACACCACATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGCAAAGCCTGGTGACAGGGTTGAGACTTATATTGACTGTCTTCATATAAAGAAGGCTGACAAGTCAAGAATGGTGGCAGAGGACATGATAGAAGTTGAGAACCGGTTGGGAGGAAACATGAATGATATCTCATTTGATGAAGCAAAGGTGGAAGAGTTGAAGGAACTCTCCAAAAAACCTGATATATATGACAGACTAACCAGGTCATTGGCACCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAGTGCCTTGAAGTTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTGTCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACTGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACAGTGTTGGAGAGCGGAGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATCGATGAATTTGACAAAATGTCTGAAAATGCAAGGAGCATGTTGCATGAGGTGATGGAGCAACAAACCGTTTCAATAGCGAAGGCTGGAATTATTGCTTCCCTCAATGCCAGAACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGTCTGTCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCTAGATTTGATTTGATCTATTTAATTCTGGATAAGGCTGATGAGCAAACAGATAGGCGCCTTGCTAAACATATTGTCTCACTACACTTTGACAACCCAGAGGGTATTGAGCAGGATTTCTTGGACCTTCAGACCTTGACTTCATATGTCAGCTATGCTAGGAAAAATATTCACCCGAAATTGTCAGATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAACTGAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTTATAACAGCTACTCCCCGGCAGATCGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGGTTGAAAAGGGCGATGTCCTTGAGGCTTTCCGCCTTCTTGAAGTCGCAATGCAACAGTCTGCAACAGATCATTCTACAGGAACCATTGACATGGATCTGATCACCACGGGAGTATCGGCAAGCGAAAGGATGCGAAGGGAGACTATATTATCGGCAACTCGCAACATTATTATGGAGAAAATGCAGCTCGGAGGACCCTCCATGCGCCTGACAGAGTTACTGGATGAGCTGAAGAAACAGAATCCTGATAATGAAGTCCACCTCAACAATCTTAGGAATGCGGCGTCGACGCTTGCAAGTGAAGGATTTGTAGCAATCCATGGTGATAGCATAAAGAGAATATGA 2649 47.45 MEAPSGAASSSSSSVEFVFHDDLEYEFVEEVERLSNWELLDASDADFEIDGNGDEQEEEEEEEEEGESCSVDVRVPKDLRGKRVVAMPISSLVEERIDGPFDDVYLLQNQVENGFAYGCNDLEEDESDDDVVDDDDDGDECDLDDELVPWSVSDKLGRQRMRKLGKRGFTRMYNSKRSPFLFTKPGCVRGKHGLGLKHSPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEFATPPRQRSRLASSETSPTATEPRSRRQGGGRRASGSRATPVAATPTSTDDIPPSTEPGDGDDMDEDHPTFVWGTSISVDDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYADAIKRVLEVEGDSLHVDAQDVFNYDADLYTKMIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTAKPGDRVETYIDCLHIKKADKSRMVAEDMIEVENRLGGNMNDISFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFLDLQTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRETILSATRNIIMEKMQLGGPSMRLTELLDELKKQNPDNEVHLNNLRNAASTLASEGFVAIHGDSIKRI 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6215415 6223030 + CmoCh11G011100.1 Cmo11g01110 391729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01110 882 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 488 499 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo11g01110 882 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 634 651 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo11g01110 882 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 786 795 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo11g01110 882 PRINTS Mini-chromosome maintenance (MCM) protein family signature 652 660 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo11g01110 882 PRINTS Mini-chromosome maintenance (MCM) protein family signature 573 587 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo11g01110 882 PRINTS Mini-chromosome maintenance (MCM) protein family signature 513 528 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo11g01110 882 PRINTS Mini-chromosome maintenance (MCM) protein family signature 601 614 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo11g01110 882 PRINTS Mini-chromosome maintenance (MCM) protein family signature 625 637 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo11g01110 882 Pfam MCM N-terminal domain 320 383 IPR027925 -
Cmo11g01110 882 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 378 881 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo11g01110 882 CDD MCM4 475 784 - -
Cmo11g01110 882 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 275 380 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo11g01110 882 MobiDBLite consensus disorder prediction 232 259 - -
Cmo11g01110 882 ProSitePatterns MCM family signature. 581 589 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cmo11g01110 882 SMART mcm 321 786 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo11g01110 882 Gene3D - 791 871 IPR036388 -
Cmo11g01110 882 Gene3D - 450 790 IPR027417 -
Cmo11g01110 882 MobiDBLite consensus disorder prediction 42 70 - -
Cmo11g01110 882 SUPERFAMILY Nucleic acid-binding proteins 380 418 IPR012340 -
Cmo11g01110 882 Pfam MCM AAA-lid domain 698 784 IPR041562 -
Cmo11g01110 882 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 275 380 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo11g01110 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 798 IPR027417 -
Cmo11g01110 882 MobiDBLite consensus disorder prediction 179 305 - -
Cmo11g01110 882 Gene3D - 273 437 IPR012340 -
Cmo11g01110 882 MobiDBLite consensus disorder prediction 43 68 - -
Cmo11g01110 882 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 378 881 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo11g01110 882 Coils Coil 842 862 - -
Cmo11g01110 882 MobiDBLite consensus disorder prediction 275 289 - -
Cmo11g01110 882 Pfam MCM P-loop domain 460 682 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo11g01110 882 ProSiteProfiles MCM family domain profile. 472 678 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo11g01110 882 MobiDBLite consensus disorder prediction 120 145 - -
Cmo11g01110 882 MobiDBLite consensus disorder prediction 201 220 - -
Cmo11g01110 882 Pfam MCM OB domain 380 418 IPR033762 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01110 Cmo-Chr11:6215415 Cmo17g01008 Cmo-Chr17:8664918 4.54E-100 dispersed
Cmo19g00697 Cmo-Chr19:7369711 Cmo11g01110 Cmo-Chr11:6215415 5.02E-65 transposed
Cmo11g01110 Cmo-Chr11:6215415 Cmo19g00696 Cmo-Chr19:7351871 3.29E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01110 K02212 - csv:101211850 920.228