Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01117 ATGAACAGAGCATTGCCGGAAATGTTGAACACGGCTGAGAATTGTGCTGACACTCTCACTGTTCTTGAGAGGCAGAGGGCTCGTTTCAAATGGCAACAAGATCAGCTTTTGTATCAGCAGCAGCAGCCATTCAATGGGATGATGGATTACGGCGCTGGATTTCCACCGTCGGATCACCTCACCGGGTTTCCGGGCTTCATGAGTGCAGCCGGCGACGGCGGCGGTGGTGGGTTGTCACTTGTGGAGATGGTAATGGGAGCAGTGAAGCCTGACCCTGGTTTGGAAGATGGGTGGTCTGATCCTTCTCTGTTGTTGAATCCCCCCACTGCTTATGAACTCAATTCTTCTCTTTCTAGAACCTCCAGCTGCCCGCCGGCGGTGAATCCAGCGGCGGCGCCTGGAAGAGAAAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCAGAAACCCATTAACAACAAAGAGAAGAAGATCAAAGCAAGTTCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTATCAAAAACTACAGATCAAAACAGCACCAAGAACAACAATTCAACCTCTACTACAACCACAACAAACAACAACAGAGAAACTTCAGCTGATACCTCCAAAGCCTCAGAGGTTAAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAAAGAATGAAGTACCTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCAGTTAATCCAAGGCTGGACTTCAATGTGGATGATCTCTTCCTCAAAGAGGTATTTCCCCCTCCTTGCACCACCGCAACCTTCGCGGCGATTGGTGGAATTTCATCAGAGATCACAGATCCTTCATCCTACTTACAATTTAATCCAAACAATCAACAAATCGTTCCGTGTTGTGGATTAGAACTGGGAATCAATACCTCCGATGTCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAATTTCCTCGATTCATCCTGCCTCACCCAATTTCAAGGCTCCTCAGGGTGGGACGTGGATTTGCAGAACCTATACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCTTACACAGGTTCGATCGAAGGAAGCAATGTAAAAATGGAACTGTGA 1275 46.04 MNRALPEMLNTAENCADTLTVLERQRARFKWQQDQLLYQQQQPFNGMMDYGAGFPPSDHLTGFPGFMSAAGDGGGGGLSLVEMVMGAVKPDPGLEDGWSDPSLLLNPPTAYELNSSLSRTSSCPPAVNPAAAPGRESFKKRKAEKVQKPINNKEKKIKASSEEEEEEEEEELSKTTDQNSTKNNNSTSTTTTTNNNRETSADTSKASEVKKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFLKEVFPPPCTTATFAAIGGISSEITDPSSYLQFNPNNQQIVPCCGLELGINTSDVALRRTISAPVSFPENFLDSSCLTQFQGSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGSNVKMEL 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6266486 6269184 - CmoCh11G011170.1 Cmo11g01117 391736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01117 424 MobiDBLite consensus disorder prediction 114 232 - -
Cmo11g01117 424 Coils Coil 150 185 - -
Cmo11g01117 424 CDD bHLH_AtBPE_like 213 298 - -
Cmo11g01117 424 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 17 404 IPR024097 GO:0006355
Cmo11g01117 424 SMART finulus 229 279 IPR011598 GO:0046983
Cmo11g01117 424 MobiDBLite consensus disorder prediction 203 232 - -
Cmo11g01117 424 Pfam Helix-loop-helix DNA-binding domain 227 274 IPR011598 GO:0046983
Cmo11g01117 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 221 292 IPR036638 GO:0046983
Cmo11g01117 424 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 17 404 - -
Cmo11g01117 424 MobiDBLite consensus disorder prediction 177 202 - -
Cmo11g01117 424 Gene3D - 220 294 IPR036638 GO:0046983
Cmo11g01117 424 MobiDBLite consensus disorder prediction 135 162 - -
Cmo11g01117 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 223 273 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01117 Cmo-Chr11:6266486 Cmo15g00881 Cmo-Chr15:4461494 6.97E-53 dispersed
Cmo14g00443 Cmo-Chr14:2113462 Cmo11g01117 Cmo-Chr11:6266486 4.35E-45 dispersed
Cmo11g01117 Cmo-Chr11:6266486 Cmo19g00689 Cmo-Chr19:7294534 0 wgd
Cmo11g01117 Cmo-Chr11:6266486 Cmo02g00400 Cmo-Chr2:2069636 1.85E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10609 PF00010 HLH 1.20E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01117 - - cmo:103490373 583.948