Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01117 | ATGAACAGAGCATTGCCGGAAATGTTGAACACGGCTGAGAATTGTGCTGACACTCTCACTGTTCTTGAGAGGCAGAGGGCTCGTTTCAAATGGCAACAAGATCAGCTTTTGTATCAGCAGCAGCAGCCATTCAATGGGATGATGGATTACGGCGCTGGATTTCCACCGTCGGATCACCTCACCGGGTTTCCGGGCTTCATGAGTGCAGCCGGCGACGGCGGCGGTGGTGGGTTGTCACTTGTGGAGATGGTAATGGGAGCAGTGAAGCCTGACCCTGGTTTGGAAGATGGGTGGTCTGATCCTTCTCTGTTGTTGAATCCCCCCACTGCTTATGAACTCAATTCTTCTCTTTCTAGAACCTCCAGCTGCCCGCCGGCGGTGAATCCAGCGGCGGCGCCTGGAAGAGAAAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCAGAAACCCATTAACAACAAAGAGAAGAAGATCAAAGCAAGTTCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTATCAAAAACTACAGATCAAAACAGCACCAAGAACAACAATTCAACCTCTACTACAACCACAACAAACAACAACAGAGAAACTTCAGCTGATACCTCCAAAGCCTCAGAGGTTAAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAAAGAATGAAGTACCTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCAGTTAATCCAAGGCTGGACTTCAATGTGGATGATCTCTTCCTCAAAGAGGTATTTCCCCCTCCTTGCACCACCGCAACCTTCGCGGCGATTGGTGGAATTTCATCAGAGATCACAGATCCTTCATCCTACTTACAATTTAATCCAAACAATCAACAAATCGTTCCGTGTTGTGGATTAGAACTGGGAATCAATACCTCCGATGTCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAATTTCCTCGATTCATCCTGCCTCACCCAATTTCAAGGCTCCTCAGGGTGGGACGTGGATTTGCAGAACCTATACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCTTACACAGGTTCGATCGAAGGAAGCAATGTAAAAATGGAACTGTGA | 1275 | 46.04 | MNRALPEMLNTAENCADTLTVLERQRARFKWQQDQLLYQQQQPFNGMMDYGAGFPPSDHLTGFPGFMSAAGDGGGGGLSLVEMVMGAVKPDPGLEDGWSDPSLLLNPPTAYELNSSLSRTSSCPPAVNPAAAPGRESFKKRKAEKVQKPINNKEKKIKASSEEEEEEEEEELSKTTDQNSTKNNNSTSTTTTTNNNRETSADTSKASEVKKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFLKEVFPPPCTTATFAAIGGISSEITDPSSYLQFNPNNQQIVPCCGLELGINTSDVALRRTISAPVSFPENFLDSSCLTQFQGSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGSNVKMEL | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6266486 | 6269184 | - | CmoCh11G011170.1 | Cmo11g01117 | 391736 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01117 | 424 | MobiDBLite | consensus disorder prediction | 114 | 232 | - | - | |
Cmo11g01117 | 424 | Coils | Coil | 150 | 185 | - | - | |
Cmo11g01117 | 424 | CDD | bHLH_AtBPE_like | 213 | 298 | - | - | |
Cmo11g01117 | 424 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 17 | 404 | IPR024097 | GO:0006355 | |
Cmo11g01117 | 424 | SMART | finulus | 229 | 279 | IPR011598 | GO:0046983 | |
Cmo11g01117 | 424 | MobiDBLite | consensus disorder prediction | 203 | 232 | - | - | |
Cmo11g01117 | 424 | Pfam | Helix-loop-helix DNA-binding domain | 227 | 274 | IPR011598 | GO:0046983 | |
Cmo11g01117 | 424 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 221 | 292 | IPR036638 | GO:0046983 | |
Cmo11g01117 | 424 | PANTHER | TRANSCRIPTION FACTOR BHLH63-LIKE | 17 | 404 | - | - | |
Cmo11g01117 | 424 | MobiDBLite | consensus disorder prediction | 177 | 202 | - | - | |
Cmo11g01117 | 424 | Gene3D | - | 220 | 294 | IPR036638 | GO:0046983 | |
Cmo11g01117 | 424 | MobiDBLite | consensus disorder prediction | 135 | 162 | - | - | |
Cmo11g01117 | 424 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 223 | 273 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01117 | Cmo-Chr11:6266486 | Cmo15g00881 | Cmo-Chr15:4461494 | 6.97E-53 | dispersed | |
Cmo14g00443 | Cmo-Chr14:2113462 | Cmo11g01117 | Cmo-Chr11:6266486 | 4.35E-45 | dispersed | |
Cmo11g01117 | Cmo-Chr11:6266486 | Cmo19g00689 | Cmo-Chr19:7294534 | 0 | wgd | |
Cmo11g01117 | Cmo-Chr11:6266486 | Cmo02g00400 | Cmo-Chr2:2069636 | 1.85E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10609 | PF00010 | HLH | 1.20E-06 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01117 | - | - | cmo:103490373 | 583.948 |