Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01125 ATGGCGGTTTCCGGTAGCAATTCGACGGAGATTCACCCCGCTGACGAATCTTCCTCCAGTTCTTCTACAACTTCTCTATCTAACTTGAAAATCTATGCTGCAATCGGTGTAATCGTTGCGTGTGTGATTGCGGCTTGTGCTTTGATCTTCCTCTGTTTCCGCAGAAATCGGGACTCGAGGAAGCACAAAATGCGGGTGAAGCACAGCTCCGGATTGATTCCTTTGGTCTCCAAGGAGATAGCCGAGATCAAAGAGTCCGATCCGACTGCGGATTGCGAGAAAGGGGAAGTGGTTAGGGTTGAGAAAAAGATGGAGATCGAGTTCGAAAGTGGAGTAGGTAAAAAGAGTCAAGAGAGCGACGTATCCGGAGGCGGTCGGAGCGACGTGTCGGTGGAGGATCAGAACTTAGGATGGGGACGGTGGTACAGCTTGAAGGAACTGGAAATGGCCACCGATGGATTTCTGGAAGAGAATGTGATCGGAGAAGGAGGGTACGGTATCGTGTACAGAGGAGTTTCGCCGGACGGCTCCGTCGTCGCCGTGAAGAGTCTTCTTAACAACAAGGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCCATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATAGGTTTCTGTGCAGAAGGAGCACAGAGGATGCTCGTGTTTGAATATATTGATAATGGCAACTTGGAGCAATGGCTACATGGTGATGTGGGGCCTGTTAGCCCTCTAACATGGGATATTAGGATGAAGATTGCTCTTGGGACAGCAAAAGGCTTGGCCTATTTGCATGAAGGTTTAGAACCTAAAGTCGTGCACCGTGATGTAAAATCCAGCAACATTCTTTTAGATAGAAAATGGAATGCAAAGGTGTCCGATTTTGGACTTGCAAAACTCTTACAACCCGAAGCCACCTACGTAACTACTCGAGTAATGGGGACGTTCGGATATGTGTCCCCTGAGTATGCAAGTACAGGCATGCTAAACGAGGGAAGCGACGTATACAGTTTCGGGGTTCTACTTATGGAGATCATTACCGGTCGAAGCCCAATCGACTATTCCAGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCGAATCGACGTGGCGAAGAGGTTGTGGATCCATTGATTGAGATTCCACCCTCTCCAAGAGCTCTAAAGCGACTGTTGCTTGTTTGTCTACGCTGCATTGACTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATCGTTCACATGCTAGAGGCAGATGACTTTCCTTATCGTTCGGAGCTTCGATCGGTGCGAGACAAAGACAGCCAGCCTTCACGACTAGACGTACCGAGTAAACTTCCATCAAAGCATGCGGTATAG 1386 48.7 MAVSGSNSTEIHPADESSSSSSTTSLSNLKIYAAIGVIVACVIAACALIFLCFRRNRDSRKHKMRVKHSSGLIPLVSKEIAEIKESDPTADCEKGEVVRVEKKMEIEFESGVGKKSQESDVSGGGRSDVSVEDQNLGWGRWYSLKELEMATDGFLEENVIGEGGYGIVYRGVSPDGSVVAVKSLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGFCAEGAQRMLVFEYIDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLQPEATYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRALKRLLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVRDKDSQPSRLDVPSKLPSKHAV 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6343141 6348077 + CmoCh11G011250.1 Cmo11g01125 391744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01125 461 CDD STKc_IRAK 160 426 - -
Cmo11g01125 461 PANTHER OS01G0323000 PROTEIN 16 442 - -
Cmo11g01125 461 SUPERFAMILY Protein kinase-like (PK-like) 132 426 IPR011009 -
Cmo11g01125 461 Pfam Protein kinase domain 156 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01125 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Cmo11g01125 461 PANTHER OS03G0227900 PROTEIN 16 442 - -
Cmo11g01125 461 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01125 461 Gene3D Phosphorylase Kinase; domain 1 125 229 - -
Cmo11g01125 461 MobiDBLite consensus disorder prediction 1 23 - -
Cmo11g01125 461 MobiDBLite consensus disorder prediction 437 461 - -
Cmo11g01125 461 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
Cmo11g01125 461 Gene3D Transferase(Phosphotransferase) domain 1 230 439 - -
Cmo11g01125 461 SMART serkin_6 154 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01125 Cmo-Chr11:6343141 Cmo14g02120 Cmo-Chr14:15315376 6.30E-167 dispersed
Cmo18g01299 Cmo-Chr18:12480770 Cmo11g01125 Cmo-Chr11:6343141 3.27E-49 dispersed
Cmo11g01125 Cmo-Chr11:6343141 Cmo19g00677 Cmo-Chr19:7201711 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74677 PF00069 Pkinase 5.10E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01125 - - cpep:111792269 878.626