Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01125 | ATGGCGGTTTCCGGTAGCAATTCGACGGAGATTCACCCCGCTGACGAATCTTCCTCCAGTTCTTCTACAACTTCTCTATCTAACTTGAAAATCTATGCTGCAATCGGTGTAATCGTTGCGTGTGTGATTGCGGCTTGTGCTTTGATCTTCCTCTGTTTCCGCAGAAATCGGGACTCGAGGAAGCACAAAATGCGGGTGAAGCACAGCTCCGGATTGATTCCTTTGGTCTCCAAGGAGATAGCCGAGATCAAAGAGTCCGATCCGACTGCGGATTGCGAGAAAGGGGAAGTGGTTAGGGTTGAGAAAAAGATGGAGATCGAGTTCGAAAGTGGAGTAGGTAAAAAGAGTCAAGAGAGCGACGTATCCGGAGGCGGTCGGAGCGACGTGTCGGTGGAGGATCAGAACTTAGGATGGGGACGGTGGTACAGCTTGAAGGAACTGGAAATGGCCACCGATGGATTTCTGGAAGAGAATGTGATCGGAGAAGGAGGGTACGGTATCGTGTACAGAGGAGTTTCGCCGGACGGCTCCGTCGTCGCCGTGAAGAGTCTTCTTAACAACAAGGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCCATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATAGGTTTCTGTGCAGAAGGAGCACAGAGGATGCTCGTGTTTGAATATATTGATAATGGCAACTTGGAGCAATGGCTACATGGTGATGTGGGGCCTGTTAGCCCTCTAACATGGGATATTAGGATGAAGATTGCTCTTGGGACAGCAAAAGGCTTGGCCTATTTGCATGAAGGTTTAGAACCTAAAGTCGTGCACCGTGATGTAAAATCCAGCAACATTCTTTTAGATAGAAAATGGAATGCAAAGGTGTCCGATTTTGGACTTGCAAAACTCTTACAACCCGAAGCCACCTACGTAACTACTCGAGTAATGGGGACGTTCGGATATGTGTCCCCTGAGTATGCAAGTACAGGCATGCTAAACGAGGGAAGCGACGTATACAGTTTCGGGGTTCTACTTATGGAGATCATTACCGGTCGAAGCCCAATCGACTATTCCAGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCGAATCGACGTGGCGAAGAGGTTGTGGATCCATTGATTGAGATTCCACCCTCTCCAAGAGCTCTAAAGCGACTGTTGCTTGTTTGTCTACGCTGCATTGACTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATCGTTCACATGCTAGAGGCAGATGACTTTCCTTATCGTTCGGAGCTTCGATCGGTGCGAGACAAAGACAGCCAGCCTTCACGACTAGACGTACCGAGTAAACTTCCATCAAAGCATGCGGTATAG | 1386 | 48.7 | MAVSGSNSTEIHPADESSSSSSTTSLSNLKIYAAIGVIVACVIAACALIFLCFRRNRDSRKHKMRVKHSSGLIPLVSKEIAEIKESDPTADCEKGEVVRVEKKMEIEFESGVGKKSQESDVSGGGRSDVSVEDQNLGWGRWYSLKELEMATDGFLEENVIGEGGYGIVYRGVSPDGSVVAVKSLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGFCAEGAQRMLVFEYIDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLQPEATYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRALKRLLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVRDKDSQPSRLDVPSKLPSKHAV | 461 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6343141 | 6348077 | + | CmoCh11G011250.1 | Cmo11g01125 | 391744 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01125 | 461 | CDD | STKc_IRAK | 160 | 426 | - | - | |
Cmo11g01125 | 461 | PANTHER | OS01G0323000 PROTEIN | 16 | 442 | - | - | |
Cmo11g01125 | 461 | SUPERFAMILY | Protein kinase-like (PK-like) | 132 | 426 | IPR011009 | - | |
Cmo11g01125 | 461 | Pfam | Protein kinase domain | 156 | 423 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01125 | 461 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 276 | 288 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo11g01125 | 461 | PANTHER | OS03G0227900 PROTEIN | 16 | 442 | - | - | |
Cmo11g01125 | 461 | ProSiteProfiles | Protein kinase domain profile. | 154 | 433 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo11g01125 | 461 | Gene3D | Phosphorylase Kinase; domain 1 | 125 | 229 | - | - | |
Cmo11g01125 | 461 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cmo11g01125 | 461 | MobiDBLite | consensus disorder prediction | 437 | 461 | - | - | |
Cmo11g01125 | 461 | ProSitePatterns | Protein kinases ATP-binding region signature. | 160 | 182 | IPR017441 | GO:0005524 | |
Cmo11g01125 | 461 | Gene3D | Transferase(Phosphotransferase) domain 1 | 230 | 439 | - | - | |
Cmo11g01125 | 461 | SMART | serkin_6 | 154 | 425 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01125 | Cmo-Chr11:6343141 | Cmo14g02120 | Cmo-Chr14:15315376 | 6.30E-167 | dispersed | |
Cmo18g01299 | Cmo-Chr18:12480770 | Cmo11g01125 | Cmo-Chr11:6343141 | 3.27E-49 | dispersed | |
Cmo11g01125 | Cmo-Chr11:6343141 | Cmo19g00677 | Cmo-Chr19:7201711 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74677 | PF00069 | Pkinase | 5.10E-46 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01125 | - | - | cpep:111792269 | 878.626 |