Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01153 ATGGCTCTTGAGGCTGTTGTTTTCCATCAGCACCCATTTGGCAACAACGACAACAGCAACAATGATCTCTTCAATTTGGTCTCTTCTTCGGCTCCCTTCACCTTCACCCATGATGAACACCACCATGATCTTTACTTTCTCACCAACCAAACACTCAATGGTGGTGGCGGCGGAGGGAGTGGGCGGCCGGCGAGGCGGCGGCGGGGAGGGAGAACCCAAAAGAATAAACAGGAAATAGAGAATCAAAGAATCACTCATATTACTGTGGAGAGGAACCGGAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGATCATTGATGCCTCACTCCTACCTCCAAAGGGGCGACCAAGCCTCAATCATAGGCGGAGCCATCGACTTTGTGAAGCAGCTTGAGCAGCAAGTACATTTGCTTACCAGCGCTCAAACATATGTAAACCCCTGTTTTCCCCCTCAAAATGCACCAATCTCTCATTTCTTTACCTGCCCTCACCTCTCCTCTGCTGCTGCTGCTGCTTCCTCCTCCTCCCCCCCCATGTCTTCCAACCAGATTCACTCCCCCATTGCCCACGTCCATGTCTCCATGGCTGACTCCCATGCAAACCTCAAGATTAGGTGTACAAAGTTCCCTAAACAGCTTCTTAAGATCGTCTCTGCTTTGCATTCCTTGCGCCTCTCTGTTCTTCATCTCAATCTCTCCACTGCCCACCAAACTGTGCTCTATTCATTCAGTCTCAAGGTTGAGGAAGATTGTGGGCTCTCTTCGGAGGATGAAATTGCTAGAGCTGTGTATCAGTTGGTTTGCAGAATTCAAGAAGAGGCCTTCTCCGTTTCAGATATCATAAACTAA 852 48.71 MALEAVVFHQHPFGNNDNSNNDLFNLVSSSAPFTFTHDEHHHDLYFLTNQTLNGGGGGGSGRPARRRRGGRTQKNKQEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYLQRGDQASIIGGAIDFVKQLEQQVHLLTSAQTYVNPCFPPQNAPISHFFTCPHLSSAAAAASSSSPPMSSNQIHSPIAHVHVSMADSHANLKIRCTKFPKQLLKIVSALHSLRLSVLHLNLSTAHQTVLYSFSLKVEEDCGLSSEDEIARAVYQLVCRIQEEAFSVSDIIN 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6624064 6626031 + CmoCh11G011530.1 Cmo11g01153 391772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01153 283 Gene3D - 72 145 IPR036638 GO:0046983
Cmo11g01153 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Cmo11g01153 283 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 64 276 - -
Cmo11g01153 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 154 IPR036638 GO:0046983
Cmo11g01153 283 PANTHER MAX DIMERIZATION, MAD 64 276 - -
Cmo11g01153 283 MobiDBLite consensus disorder prediction 51 79 - -
Cmo11g01153 283 Pfam Helix-loop-helix DNA-binding domain 82 133 IPR011598 GO:0046983
Cmo11g01153 283 SMART finulus 87 138 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01165 Cmo11g01153 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01153 Cmo-Chr11:6624064 Cmo12g01101 Cmo-Chr12:10070288 1.15E-71 dispersed
Cmo10g01149 Cmo-Chr10:9722665 Cmo11g01153 Cmo-Chr11:6624064 1.45E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10611 PF00010 HLH 6.10E-10 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01153 - - cpep:111792889 468.388