Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01160 | ATGGATCAGCAAGGGCATGGCCAGCCTCAATCCATGGGAGCGGTTGGCAGTGGTGGTCAGATAGCATATGGCAGTAACTTGTACCATCCCGGCCAAATAACTGTAGGCTCGACTTCTGGATCTGTTGTTACATCGGTTGGAGGTATTCAGTCTACGAGTCAACCTGGTGGAGCGCAGCTTGGTCAACATCAACTTGCTTATCAGCATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTCTGGGCTAATCAGTACCAAGAGATTGAGAAGGTAACGGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTCGCTAGGGCATGTGAAATGTTCATCCTTGAATTGACTTTACGCTCTTGGAATCATACTGAAGAGAACAAGCGCAGAACGCTTCAAAAGAATGATATTGCTGCAGCTATCACCAGAACTGACATTTTCGATTTTCTGGTTGATATCGTGCCTAGGGAGGATCTGAAAGACGAAGTACTCACATCAATTCCAAGAGGATCGATAACAGTTGGAGGACCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTCGGAGCACCCGGAATGATTATGGGCAAGCCTGTGATGGACCCGGCTATATATGCTCAACAATCACACCCTTACATGCCTCCACAAATGTGGCAACACACACAAGATCAAGCCCCTCCTGATCAATAG | 783 | 47.38 | MDQQGHGQPQSMGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGAQLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAIYAQQSHPYMPPQMWQHTQDQAPPDQ | 260 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6703878 | 6704660 | + | CmoCh11G011600.1 | Cmo11g01160 | 391779 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01160 | 260 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 1 | 259 | - | - | |
Cmo11g01160 | 260 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 103 | 166 | IPR003958 | - | |
Cmo11g01160 | 260 | SUPERFAMILY | Histone-fold | 71 | 175 | IPR009072 | GO:0046982 | |
Cmo11g01160 | 260 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 1 | 259 | - | - | |
Cmo11g01160 | 260 | Gene3D | Histone, subunit A | 65 | 181 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g00031 | Cmo-Chr11:136282 | Cmo11g01160 | Cmo-Chr11:6703878 | 4.64E-69 | dispersed | |
Cmo11g01160 | Cmo-Chr11:6703878 | Cmo11g01511 | Cmo-Chr11:10721143 | 4.60E-80 | dispersed | |
Cmo10g01156 | Cmo-Chr10:9920448 | Cmo11g01160 | Cmo-Chr11:6703878 | 4.63E-158 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10612 | PF00808 | CBFD_NFYB_HMF | 2.80E-18 | CL0012 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01160 | K08066 | - | csv:101209664 | 447.203 |