Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01172 | ATGTCCAAACCCTCAGGGTGCTCCGATGATGGTGGGAGCTTGAGCTTAGAGAATCAACTCACCCATGGAAGCTCTCAACCCCATCAACAGCCTCAGCTTTCAGTTCCCAAGAAGAAAAGGAACTTACCAGGAACACCAGACCCAGATGCTGAAGTGGTAGCGTTATCGCCGGGAACGTTAATGGCAACGAATCGGTTTGTGTGTGAAATATGCAACAAGGGATTTCAAAGAGACCAGAACTTGCAGCTACACAGGCGAGGCCACAACCTGCCATGGAAGCTGAAGCAACGAACGAGCGGGAGCGACACGAGGAGGAGGCGGGTGTACGTATGTCCAGAAACGTCGTGCGTCCACCACAATCCAGCGAGAGCGCTCGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAGCATGGGGAGAAGAATTGGAAGTGTGAGAAATGCTCTAAGAAATACGCAGTTCATTCCGACTTGAAAGCTCATCTCAAAACCTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACTGTCTTTTCCAGGAGAGATAGCTTCATAACCCACAGAGCATATTGCGATGCCTTAACAGAAGAAAGCAACAAACTAGCTGGTCGAGGAGCAACAATGGCTGCCTCGCCACCCATAACACTGCCCCACCACGACCTCATGCCTATCCCTCCAAAGCCCTTTAACCTTTCAGCCGGGTCCATGTTTTCATCCTCCATTTCCAACGACCACCACTTTCCCTCCTCCTCCTCCGCCGCCCTCATGTCCGCCACTGCCTTGCTGCAGAAGGCGGCGCAGATGGGAGCTGCCGTCAGTTCGCCCATAATCCAACAAAAGAACGGTTTCGTTACAACAATGGCTCCTTCTTCATTTGGTGGGATGTTGCCCACCACCTGTTTGCAGAAATGCCCACAAGAAAACATTGGCGGAGGTGTGGACATGGAGATGATTGATGACATTCTGATGCTCAATGGGATGTTCGATAAGTCGATCGGGGAGGGCGCGAGGAAGACGATGACATTGGATTTGTTGGGGGCTGAGGGAGGGAAGGGGAGGAAGTTTCAGGCGGAAGAAAGTGTAGGGTTTGGAGGGGTTATGGAGAATGTGGGTTACTTTTGCCACCAAGGGGCCATGGGAAAGCAAGGTCATATGTGA | 1161 | 51.68 | MSKPSGCSDDGGSLSLENQLTHGSSQPHQQPQLSVPKKKRNLPGTPDPDAEVVALSPGTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSDTRRRRVYVCPETSCVHHNPARALGDLTGIKKHFSRKHGEKNWKCEKCSKKYAVHSDLKAHLKTCGSKEYKCDCGTVFSRRDSFITHRAYCDALTEESNKLAGRGATMAASPPITLPHHDLMPIPPKPFNLSAGSMFSSSISNDHHFPSSSSAALMSATALLQKAAQMGAAVSSPIIQQKNGFVTTMAPSSFGGMLPTTCLQKCPQENIGGGVDMEMIDDILMLNGMFDKSIGEGARKTMTLDLLGAEGGKGRKFQAEESVGFGGVMENVGYFCHQGAMGKQGHM | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6772071 | 6775264 | + | CmoCh11G011720.1 | Cmo11g01172 | 391791 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01172 | 386 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 242 | 304 | - | - | |
Cmo11g01172 | 386 | Gene3D | Classic Zinc Finger | 122 | 202 | - | - | |
Cmo11g01172 | 386 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 13 | 204 | - | - | |
Cmo11g01172 | 386 | SMART | c2h2final6 | 109 | 139 | IPR013087 | - | |
Cmo11g01172 | 386 | SMART | c2h2final6 | 144 | 164 | IPR013087 | - | |
Cmo11g01172 | 386 | SMART | c2h2final6 | 66 | 88 | IPR013087 | - | |
Cmo11g01172 | 386 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cmo11g01172 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 66 | 88 | IPR013087 | - | |
Cmo11g01172 | 386 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 68 | 88 | IPR013087 | - | |
Cmo11g01172 | 386 | Gene3D | Classic Zinc Finger | 44 | 115 | - | - | |
Cmo11g01172 | 386 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cmo11g01172 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 144 | 172 | IPR013087 | - | |
Cmo11g01172 | 386 | SUPERFAMILY | beta-beta-alpha zinc fingers | 65 | 164 | IPR036236 | - | |
Cmo11g01172 | 386 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 242 | 304 | - | - | |
Cmo11g01172 | 386 | Pfam | Zinc-finger of C2H2 type | 66 | 88 | - | - | |
Cmo11g01172 | 386 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 13 | 204 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01172 | Cmo-Chr11:6772071 | Cmo01g00064 | Cmo-Chr1:257387 | 5.72E-103 | dispersed | |
Cmo11g01172 | Cmo-Chr11:6772071 | Cmo20g00655 | Cmo-Chr20:3205336 | 2.59E-107 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10613 | PF12874 | zf-met | 0.0026 | CL0361 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01172 | - | - | cpep:111792882 | 669.077 |