Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01172 ATGTCCAAACCCTCAGGGTGCTCCGATGATGGTGGGAGCTTGAGCTTAGAGAATCAACTCACCCATGGAAGCTCTCAACCCCATCAACAGCCTCAGCTTTCAGTTCCCAAGAAGAAAAGGAACTTACCAGGAACACCAGACCCAGATGCTGAAGTGGTAGCGTTATCGCCGGGAACGTTAATGGCAACGAATCGGTTTGTGTGTGAAATATGCAACAAGGGATTTCAAAGAGACCAGAACTTGCAGCTACACAGGCGAGGCCACAACCTGCCATGGAAGCTGAAGCAACGAACGAGCGGGAGCGACACGAGGAGGAGGCGGGTGTACGTATGTCCAGAAACGTCGTGCGTCCACCACAATCCAGCGAGAGCGCTCGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAGCATGGGGAGAAGAATTGGAAGTGTGAGAAATGCTCTAAGAAATACGCAGTTCATTCCGACTTGAAAGCTCATCTCAAAACCTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACTGTCTTTTCCAGGAGAGATAGCTTCATAACCCACAGAGCATATTGCGATGCCTTAACAGAAGAAAGCAACAAACTAGCTGGTCGAGGAGCAACAATGGCTGCCTCGCCACCCATAACACTGCCCCACCACGACCTCATGCCTATCCCTCCAAAGCCCTTTAACCTTTCAGCCGGGTCCATGTTTTCATCCTCCATTTCCAACGACCACCACTTTCCCTCCTCCTCCTCCGCCGCCCTCATGTCCGCCACTGCCTTGCTGCAGAAGGCGGCGCAGATGGGAGCTGCCGTCAGTTCGCCCATAATCCAACAAAAGAACGGTTTCGTTACAACAATGGCTCCTTCTTCATTTGGTGGGATGTTGCCCACCACCTGTTTGCAGAAATGCCCACAAGAAAACATTGGCGGAGGTGTGGACATGGAGATGATTGATGACATTCTGATGCTCAATGGGATGTTCGATAAGTCGATCGGGGAGGGCGCGAGGAAGACGATGACATTGGATTTGTTGGGGGCTGAGGGAGGGAAGGGGAGGAAGTTTCAGGCGGAAGAAAGTGTAGGGTTTGGAGGGGTTATGGAGAATGTGGGTTACTTTTGCCACCAAGGGGCCATGGGAAAGCAAGGTCATATGTGA 1161 51.68 MSKPSGCSDDGGSLSLENQLTHGSSQPHQQPQLSVPKKKRNLPGTPDPDAEVVALSPGTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSDTRRRRVYVCPETSCVHHNPARALGDLTGIKKHFSRKHGEKNWKCEKCSKKYAVHSDLKAHLKTCGSKEYKCDCGTVFSRRDSFITHRAYCDALTEESNKLAGRGATMAASPPITLPHHDLMPIPPKPFNLSAGSMFSSSISNDHHFPSSSSAALMSATALLQKAAQMGAAVSSPIIQQKNGFVTTMAPSSFGGMLPTTCLQKCPQENIGGGVDMEMIDDILMLNGMFDKSIGEGARKTMTLDLLGAEGGKGRKFQAEESVGFGGVMENVGYFCHQGAMGKQGHM 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6772071 6775264 + CmoCh11G011720.1 Cmo11g01172 391791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01172 386 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 242 304 - -
Cmo11g01172 386 Gene3D Classic Zinc Finger 122 202 - -
Cmo11g01172 386 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 13 204 - -
Cmo11g01172 386 SMART c2h2final6 109 139 IPR013087 -
Cmo11g01172 386 SMART c2h2final6 144 164 IPR013087 -
Cmo11g01172 386 SMART c2h2final6 66 88 IPR013087 -
Cmo11g01172 386 MobiDBLite consensus disorder prediction 1 51 - -
Cmo11g01172 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Cmo11g01172 386 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Cmo11g01172 386 Gene3D Classic Zinc Finger 44 115 - -
Cmo11g01172 386 MobiDBLite consensus disorder prediction 1 36 - -
Cmo11g01172 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 172 IPR013087 -
Cmo11g01172 386 SUPERFAMILY beta-beta-alpha zinc fingers 65 164 IPR036236 -
Cmo11g01172 386 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 242 304 - -
Cmo11g01172 386 Pfam Zinc-finger of C2H2 type 66 88 - -
Cmo11g01172 386 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01172 Cmo-Chr11:6772071 Cmo01g00064 Cmo-Chr1:257387 5.72E-103 dispersed
Cmo11g01172 Cmo-Chr11:6772071 Cmo20g00655 Cmo-Chr20:3205336 2.59E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10613 PF12874 zf-met 0.0026 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01172 - - cpep:111792882 669.077