Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01193 ATGGCGACCTCCAAATCCCAAAGGTCTCCTGAGGAGGTGGAAGACATTATCCTTCGCAAAGTTTTCCTTGTCTCTCTCACCCCTCCTTCCGATTCCGATTCTCGCACCGTCTATCTCGAGCAAACCGCCGCCGAGCTCCTTAGCGAAGGCAAGCAATTGAGGATTTCAAGGGATGTAATGGAGCGTATCATAATTGATCGTCTATCGAGTAATTTCCCCTCTGCCGAACCTATTTTTCAGTACCTAATCGGCTGCTACCGTCGGGCTCACGACGAGACTAAGAAAATTGCCTCCATGAAGGATAGGAATTTACGGTCTGAGATTGAGATGGCGCTCAAACAAGCCAAGAAGTTGACGGTTTCCTATTGTAGGATTCATTTGGGGAATCCTGAATTGTTTTCGGGTGGGGATTTGGGTAGTAACTCCACTACTTCGCCTTTGCTTCCTTTGATTTTCTCTGAAGTTGGTAGCTCCATGGATGGATTTGGGGCTAGTACCAGTGTTGGTGGAGCCTATCAGTGCCCTCCGGGTTTCATGGACGAGTTTTTCCGGGATTCGGATTTTGATACATTAGACCCCATATTGAGGGGGTTGTACGAGGATTTGAGGGGTACCGTCCTTAAAGTTTCGGCTCTTGGGAACTTCCAGCAGCCCTTAAGGGCACTTAGGTTTCTTGTTAGTTTTCCCATTGGGGCTAAATCTTTGGTTAATCATCCATGGTGGATTCCCCCTGGTAAATATTCCAATGGCCGTGTCATTGAGAGGACAAGTATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCCGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGGCAGCAATGCTTTTCAGAAGCATCAACTCGTAGACCATCTGATTTACTCTCTTCATTCACTACAATTAAAACAGTCATGAATAACTTATATGATGGTCTTGCGGAAGTTCTTCTCTCTCTTCTTAAGAACACAGAGACCCGTGAGAATGTTCTTGAGTATCTTGCAGAGGTGATAAATAGAAACTCATCAAGGGCTCATATACAGGTTGATCCTCTCTCCTGTGCAAGTTCAGGCATGTTTGTTAATCTCAGTGCCATCATGCTACGTCTTTGTGAGCCATTTCTAGATGCAAACTTGACCAAAAGGGATAAAATTGATCCGAAATATGTATGTTATGGTAACCGCTTGGAGTTAAGAGGATTAACTGCTCTACATGCATCGTCTGAAGAAGTTACAGACTGGATTAATAATGGTACTCAGTTGAAAACTGATAACTCCGGGCAGTTCAGTGACAGTGAAAGTCGCTTGCTGCAATCCCAAGAAGCTTCTAGTTCTGGCAGTAATGCTACAATTGAATCTTCTACTGCAAAGGCAAGATCGAATAGTGTGAAGACTAGGTACCCTTTCATATGTGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCGGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGGCCACACTCAAAGCCATGCAAGGACAAGGGCCTGCTCCACAGCTTGAAATGGATGTAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTTTGAAGCTCAAATACTGAGGGACGGGAGTCTAATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTTGTATGGTTAGTTGGTTTGATTGGTGGATTTAAAATGCCTCTTCCATCAAGTTGCCCGATGGAATTTGCATCCATGCCAGAGCATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCCCGAATTCCAAAAGCTTTGGACGGTATCAATTTGGATGATTTTATGAACTTCATCATTATGTTTATGGCAAGTCCGGAATATATTAGAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTCTCAACTGCTGGATTCCTCGTAGAAGTGGTTCATCTGTAACAGCAACATTATTTGAAGGCCACCAACTATCACTCGAGTATCTTGTCAGGAATCTCTTAAAGCTTTATGTGGACATTGAGTTCACTGGTTCACATACACAGTTTTATGACAAGTTCAACATCCGTCATAATATTGCCGAACTTCTCGAATACCTTTGGCAGGTTCCTAGTCATCGTAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTTCTTGATGAAAGCCTTAATAAAATTCTCGAACTTAAAGAGCTTGAAGCTGAAATGTCAAATACTGCAGAATGGGAGCAACGACCTGCTCAAGAGAGGCAGGAGAGAACTAGGCTATTTCACTCCCAAGAAAATATCATCCGGATTGACATGAAATTAGCAAATGAGGATGTGAGTATGCTGGCATTTACAACAGAGCAAATCACAGCTCCTTTTCTACTTCCAGAGATGGTCGAACGGGTAGCCAGCATGCTTAATTATTTCCTCCTGCAACTTGTTGGTCCTCAGCGAAGATCTCTTAGTCTGAAAGACCCTGAAAAGTACGAATTCCGTCCAAAAGAGTTGCTTAAGCAGATTGTTCACATATATGTTCATCTGGCGAGAGGCGATAAGGAGAATATTTTCCCAGCTGCCATTTCGAAGGACGGAAGATCGTATAACGAGCAGTTGTTCAATGCTGCAGCAGTTGTACTTAGACGAATTGGAGAAGATGGTAGGATAATACAGGAATTTATTGCTCTTGGTAACAAGGCGAAGGATGCAGCTTCAGAGGCCATGGATGCTGAGGCTACTCTAGGAGATATACCGGATGAATTCCTTGACCCGATCCAATATACTTTAATGAAGGATCCTGTGATCTTACCTTCTTCAAGGATCACGGTCGACAGACCCGTCATTCAAAGACATCTCCTTAGCGATAGCACCGACCCGTTCAACCGATCTCATCTGACTTCGGACATGCTAATACCAAACGAAGAACTGAAAGCAAGGATCAAAGAGTTCATCATGTCAAAAAAATTGAAGAGGCAACCGGACGGAGGGGTTGCGATGCAGAGCAGCAAGGCGACGATCCAACCCACAAGCGGAGAAATGTTGATTGATTAA 3123 43.32 MATSKSQRSPEEVEDIILRKVFLVSLTPPSDSDSRTVYLEQTAAELLSEGKQLRISRDVMERIIIDRLSSNFPSAEPIFQYLIGCYRRAHDETKKIASMKDRNLRSEIEMALKQAKKLTVSYCRIHLGNPELFSGGDLGSNSTTSPLLPLIFSEVGSSMDGFGASTSVGGAYQCPPGFMDEFFRDSDFDTLDPILRGLYEDLRGTVLKVSALGNFQQPLRALRFLVSFPIGAKSLVNHPWWIPPGKYSNGRVIERTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPSDLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYGNRLELRGLTALHASSEEVTDWINNGTQLKTDNSGQFSDSESRLLQSQEASSSGSNATIESSTAKARSNSVKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLATLKAMQGQGPAPQLEMDVARLEKEIELYSQEKLCFEAQILRDGSLIQQALTFYRLMVVWLVGLIGGFKMPLPSSCPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTTEQITAPFLLPEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKELLKQIVHIYVHLARGDKENIFPAAISKDGRSYNEQLFNAAAVVLRRIGEDGRIIQEFIALGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNEELKARIKEFIMSKKLKRQPDGGVAMQSSKATIQPTSGEMLID 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6976986 6984370 - CmoCh11G011930.1 Cmo11g01193 391812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01193 1040 Coils Coil 519 546 - -
Cmo11g01193 1040 SUPERFAMILY RING/U-box 933 1014 - -
Cmo11g01193 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 940 1018 IPR013083 -
Cmo11g01193 1040 CDD RING-Ubox_UBE4A 943 1012 - -
Cmo11g01193 1040 Pfam Ubiquitin elongating factor core 259 924 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Cmo11g01193 1040 ProSiteProfiles U-box domain profile. 940 1014 IPR003613 GO:0004842|GO:0016567
Cmo11g01193 1040 SMART Ubox_2 944 1007 IPR003613 GO:0004842|GO:0016567
Cmo11g01193 1040 PANTHER - 1 1015 - -
Cmo11g01193 1040 MobiDBLite consensus disorder prediction 1018 1040 - -
Cmo11g01193 1040 PANTHER UBIQUITINATION FACTOR E4 1 1015 IPR045132 GO:0000151|GO:0030433|GO:0034450
Cmo11g01193 1040 MobiDBLite consensus disorder prediction 423 456 - -
Cmo11g01193 1040 Pfam U-box domain 941 1012 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01193 Cmo-Chr11:6976986 Cmo14g00572 Cmo-Chr14:2913814 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01193 K10597 - csv:101211398 1923.67