Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01201 ATGGAGGTTCTAAGAAGGGGCAGCGGCGGTGGGCTGTTGGCGGCGGTGGTGCTGCTGCTGCTGGCGGCGGCGGTGTCGGAAGTTTCAGCTAAACGGTGGACTGTTGGTGACAACATGGGGTGGACGTCCAATGTGAACTACACTGTCTGGGCTGAAGGGAAGCACTTCTACTATGACGACTGGCTCTTTTTTGTGTACGACAGGAACCAAATGGATGTGTTGGAGGTGAACAAGACAAACTACGAGGCTTGCAATTCTGAGAATCCACTAAAAAACTTCACCACAGGAGCTGGAAGAGATGTTGTTCATTTGAATGTAACAAGACCTTATTACTTCATAAGTGGCAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCAATGTCGAGCACCTACCGCCCCCGCCCTCGAGCTCACCCTTGAATGAGAAGAGCAGTGCTCCAAGATCAACCCACATGGGCCACATCCCGTTCGTTTTAACCGCTGTTTTTGCAGCTGCTCGGGCCTTGATATGGTAA 519 51.25 MEVLRRGSGGGLLAAVVLLLLAAAVSEVSAKRWTVGDNMGWTSNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPPPSSSPLNEKSSAPRSTHMGHIPFVLTAVFAAARALIW 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7078071 7079794 + CmoCh11G012010.1 Cmo11g01201 391820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01201 172 PANTHER LAMIN-LIKE PROTEIN 13 167 - -
Cmo11g01201 172 PANTHER BLUE COPPER PROTEIN 13 167 IPR039391 GO:0009055
Cmo11g01201 172 Gene3D - 29 132 IPR008972 -
Cmo11g01201 172 SUPERFAMILY Cupredoxins 30 129 IPR008972 -
Cmo11g01201 172 Pfam Plastocyanin-like domain 41 123 IPR003245 GO:0009055
Cmo11g01201 172 ProSiteProfiles Phytocyanin domain profile. 31 131 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01201 - - - csv:101210415 254.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01201 Cmo-Chr11:7078071 Cmo14g00570 Cmo-Chr14:2904600 1.84E-94 dispersed
Cmo11g01201 Cmo-Chr11:7078071 Cmo11g01202 Cmo-Chr11:7081768 2.20E-34 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1593 . . Bda01g01224 . Bpe02g01443 Bpe14g00162 . . . Cmo11g01201 . . Car11g00976 Car14g00951 . . . . . . . . . . Cla10g01479 Cam10g1524 Cec10g1562 Cco10g1540 Clacu10g1537 Cmu10g2301 Cre10g1684 . . . Cone16ag0481 . . . . Blo17g00375 Blo18g00400 . . . . . . . . . . . . . Cpe04g00182 . . . . . . . . . . . . . . . . Csa03g03793 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00026 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 2.0e-38 156.4
Cmo11g01201 . 24 166 Phytocyanin Superfamily AT3G01070 54.4 6.4e-39 157.9
Cmo14g00570 CST 19 178 Phytocyanin Superfamily AT3G01070 51.5 1.3e-36 150.2
Cmo05g00351 CST 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.0e-42 170.6
Cmo14g00570 CST 26 185 Phytocyanin Superfamily AT5G15350 50.9 4.0e-44 175.3
Cmo11g01201 . 28 162 Phytocyanin Superfamily AT5G15350 55.5 5.8e-43 171.4
Cmo05g00351 CST 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.3e-45 177.6
Cmo18g00026 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 2.0e-38 156.4
Cmo12g00319 CST 21 165 Phytocyanin Superfamily AT5G25090 57.7 3.5e-38 155.6
Cmo05g00351 CST 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.0e-42 170.6
Cmo05g00351 CST 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.3e-45 177.6
Cmo11g01201 . 24 166 Phytocyanin Superfamily AT3G01070 54.4 6.4e-39 157.9
Cmo14g00570 CST 19 178 Phytocyanin Superfamily AT3G01070 51.5 1.3e-36 150.2
Cmo14g00570 CST 26 185 Phytocyanin Superfamily AT5G15350 50.9 4.0e-44 175.3
Cmo11g01201 . 28 162 Phytocyanin Superfamily AT5G15350 55.5 5.8e-43 171.4
Cmo20g00135 . 19 229 Phytocyanin Superfamily AT1G08500 59.4 3.0e-63 239.2
Cmo10g01025 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.6e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01201 Cmo_Chr11 FPKM 42.149899 47.814213 28.32193 29.939316 62.067902 57.300823 64.713463 28.442007 25.26601 29.119463