Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01238 ATGCGACCAATTTTGATGAAAGGCCATGAACGGCCATTGACTTTCCTTAAATACAACCGGGATGGCGATCTCCTTTTCTCATGCGCCAAGGATCACAATCCCACCGTCTGGTTCGCCGACAACGGCGAGCGATTGGGGACTTATCGTGGTCATAATGGTGCCGTTTGGTGCTGCGATGTCTCTAGAGATTCAATGCGGCTCATCACCGGCAGTGCGGATCAGACGGCGAAACTGTGGAATGTGCAAACTGGACAACAACTATTCTCTTTCAATTTTGACTCACCTGCTAGGGCGGTTGATTTCTCTGTCGGCGATAAGCTTGCTGTGATTACCACCGATCCTTTCATGGAATTGCCCTCTGCTATTCACGTTAAACGCATTGCCAGAAACCCCTCGGAACAGACTGGTGAATCTGTGCTTCTTCTGAAGGGTCCTCAGGGAAGAATCAACAGAGCTGTTTGGGGGCCTCTAAATAAAACCATTATAAGTGCAGGAGAAGATGCTGTTATTCGCATTTGGGATTCTGAGACAGGTAAACTTTTAAAAGAATCAGACAAGGAGACGGGCCATAAGAAAACAATAACTTCCCTTACAAAATCCTCTGATGGTTCGCATTTTGTAACTGGTTCTTTGGACAAGTCTGCTAGGCTGTGGGATACTAGAACGTTGACACTTATCAAGACGTATGTGACAGAACGCCCAGTCAATGCTGTTACAATGTCTCCCCTTCTTGATCACGTGGTGCTTGGTGGTGGTCAGGATGCTTCAGCAGTGACAACAACCGATCATCGTGCAGGGAAGTTTGAAGCTAAATTCTATGATAAGATACTTCAAGAAGAGATCGGAGGTGTGAAAGGGCATTTTGGACCCATTAATGCTCTGGCTTTCAATCCTGATGGGAAGAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTAAGACTGCATCATTTTGACCCTGATTACTTCAACATCAAGATTTAA 981 45.67 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIARNPSEQTGESVLLLKGPQGRINRAVWGPLNKTIISAGEDAVIRIWDSETGKLLKESDKETGHKKTITSLTKSSDGSHFVTGSLDKSARLWDTRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7706204 7711987 + CmoCh11G012380.1 Cmo11g01238 391857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01238 326 SMART WD40_4 41 80 IPR001680 GO:0005515
Cmo11g01238 326 SMART WD40_4 277 316 IPR001680 GO:0005515
Cmo11g01238 326 SMART WD40_4 135 174 IPR001680 GO:0005515
Cmo11g01238 326 SMART WD40_4 222 261 IPR001680 GO:0005515
Cmo11g01238 326 SMART WD40_4 177 219 IPR001680 GO:0005515
Cmo11g01238 326 SMART WD40_4 1 38 IPR001680 GO:0005515
Cmo11g01238 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 314 IPR001680 GO:0005515
Cmo11g01238 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Cmo11g01238 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 314 - -
Cmo11g01238 326 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Cmo11g01238 326 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Cmo11g01238 326 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Cmo11g01238 326 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cmo11g01238 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Cmo11g01238 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Cmo11g01238 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Cmo11g01238 326 Pfam WD domain, G-beta repeat 283 314 IPR001680 GO:0005515
Cmo11g01238 326 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Cmo11g01238 326 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Cmo11g01238 326 CDD WD40 7 314 - -
Cmo11g01238 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Cmo11g01238 326 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 326 IPR027525 GO:0003743|GO:0005737|GO:0005852
Cmo11g01238 326 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Cmo11g01238 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Cmo11g01238 326 Gene3D - 1 326 IPR015943 GO:0005515
Cmo11g01238 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Cmo11g01238 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Cmo11g01238 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Cmo11g01238 326 SUPERFAMILY WD40 repeat-like 4 314 IPR036322 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00550 Cmo-Chr11:2675836 Cmo11g01238 Cmo-Chr11:7706204 1.44E-40 dispersed
Cmo11g01238 Cmo-Chr11:7706204 Cmo14g00574 Cmo-Chr14:2930933 0 dispersed
Cmo11g01238 Cmo-Chr11:7706204 Cmo10g00625 Cmo-Chr10:2825343 5.31E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01238 K03246 - csv:101211648 661.373