Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01246 ATGGCTTATGATGATGCTGCTGCTGAGAACCGGAAGCGCTACGCCATCATCGGCGTCTCGTCCATGCTACTCGTTGCGATGGTGGTGGCTGTGACCGTTGGAGTTAACCTAAACCAAGATGGAACGAGCGATCCGGCCACCGGAAAGAAGACTCATGAGATATCTTCTTCTATGAAAGCCATCAAAGCCATTTGCCGGCCTACCGATTACAAGCGAGAATGTGTTGATAGCCTTAAGGGGTCCGGAAAGTCGGACCCGAAGGAATTGGTTCAGGTTGGGTTCAAGGCTGCCATGAAACTCATCCAAGCCGCTGCTAAGAAATCTGTCACCTTAAGACAGATTGAGAAAGATCCTAGAGCTTCCCAAGCCCTTGCTGTGTGTAAGGAGCTCATGGATTATTCTGTTGACGAACTTAAATTCTCCATTCAAAAGCTTGGCGCCTTTGACATTAGTAAACTCGATGAGATGTTGATCGATATTAAGATCTGGCTCAGTGCCGTTATTACTTACCAGGAAACTTGCTTGGATGGGTTCGCGAACACGACAGGGGACGCATCGGAAAAGATGAAGAAGGCATTGAAGACATCGATGCGATTGAGCAGCAATGGGTTGGCGATGGTCACGGAGTTGTCCTCCATGTTGACGGAGTTGCAAATTCCAGGGATCAACCGACGACTTCTCAGCATTCCAGTTCTCGGGCACGAGGATTTCCCCGAGTGGGTCGACCCCGGTATGCAGCGTCTCCTGGCCGGTTCTCCGGCGAAGAGGAAGCCAAACATTGTGGTGGCTAAAGACGGAAGTGGGCAGTACAAAACCATTCAAGAGGCTATAAACAAAGTTCCCAAGAGGAAGAACAACGCAACTTTTGTAATCCATATCAAGCAAGGAGTGTACAAAGAATATGTTGACATTCAAAAAAAGCTAACCCATTTGATGCTCATTGGTGATGGCCCTAAAAAGACCATAATCACCGGAAATAAGAACTTCGTCGATGGCACGAACACGTTCAAGACCGCTACCGTTGCTGTTTCCGCAGAGCACTTCATGGCTAGAGACATCGGATTCGAGAACACGGCAGGACCACATAAGCACCAAGCCGTAGCATTACGAGTCCAAGCAGACAAAGTAGTATTCTTCAATTGCGAGATGCATGGATACCAAGACACCCTCTACGTACACACCATGCGTCAATTCTACCGGGACTGCACCATCTCCGGCACAATCGACTTCGTGTTCGGGGACGCAGCGGCCGTGTTCCAAAACTGCAGCTTCTTGGTGCGCAAGCCGCTGCCGAACCAACAAAACATCGTGACGGCGCACGGGCGGAAGGAGCGGAGGCAGCCCTCGGCCCTGATCATCCAGAATTCGAAGTTCAAGCCGGATGCGGATCTGGTGCCGGTGAAGAAGCAGTTCCGGTCGTACCTAGGGCGGCCGTGGAAGGAATATTCTAGAACGATCATAATGGAATCATACATAGATGACATAATAGATCCGGAAGGGTGGCTGCCGTGGGCAGGGGACTGGGGGCTGAGGACGTGCTTTTACACGGAGTTCAACAACTTCGGGCCGGGGTCGGGGAAGGCGAAGAGGGTGAAGTGGAGGGGAATCAAGAGCATTACGCCGCAGCACGCGGTGGACTTTACTCCGGGGAGGTTCATATTGGGGGATAGATGGATTAAAGCCACCGGAGTACCGTACGTTTCAGGGATGACCAAACCCAAGGCGGGAGTTGGTAATTGA 1740 51.15 MAYDDAAAENRKRYAIIGVSSMLLVAMVVAVTVGVNLNQDGTSDPATGKKTHEISSSMKAIKAICRPTDYKRECVDSLKGSGKSDPKELVQVGFKAAMKLIQAAAKKSVTLRQIEKDPRASQALAVCKELMDYSVDELKFSIQKLGAFDISKLDEMLIDIKIWLSAVITYQETCLDGFANTTGDASEKMKKALKTSMRLSSNGLAMVTELSSMLTELQIPGINRRLLSIPVLGHEDFPEWVDPGMQRLLAGSPAKRKPNIVVAKDGSGQYKTIQEAINKVPKRKNNATFVIHIKQGVYKEYVDIQKKLTHLMLIGDGPKKTIITGNKNFVDGTNTFKTATVAVSAEHFMARDIGFENTAGPHKHQAVALRVQADKVVFFNCEMHGYQDTLYVHTMRQFYRDCTISGTIDFVFGDAAAVFQNCSFLVRKPLPNQQNIVTAHGRKERRQPSALIIQNSKFKPDADLVPVKKQFRSYLGRPWKEYSRTIIMESYIDDIIDPEGWLPWAGDWGLRTCFYTEFNNFGPGSGKAKRVKWRGIKSITPQHAVDFTPGRFILGDRWIKATGVPYVSGMTKPKAGVGN 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7830333 7832235 - CmoCh11G012460.1 Cmo11g01246 391865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01246 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 211 IPR035513 -
Cmo11g01246 579 PANTHER PECTINESTERASE 16 572 - -
Cmo11g01246 579 SUPERFAMILY Pectin lyase-like 257 569 IPR011050 -
Cmo11g01246 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 210 IPR006501 GO:0004857
Cmo11g01246 579 Pfam Pectinesterase 259 556 IPR000070 GO:0030599|GO:0042545
Cmo11g01246 579 PANTHER PECTINESTERASE 16 572 - -
Cmo11g01246 579 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Cmo11g01246 579 Pfam Plant invertase/pectin methylesterase inhibitor 60 206 IPR006501 GO:0004857
Cmo11g01246 579 SMART PMEI_2 56 206 IPR006501 GO:0004857
Cmo11g01246 579 CDD PMEI-like_3 63 212 - -
Cmo11g01246 579 Gene3D - 253 570 IPR012334 -
Cmo11g01246 579 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Cmo11g01246 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 211 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01213 Cmo-Chr10:11879386 Cmo11g01246 Cmo-Chr11:7830333 5.63E-18 dispersed
Cmo11g01246 Cmo-Chr11:7830333 Cmo17g00328 Cmo-Chr17:1985349 0 dispersed
Cmo11g01246 Cmo-Chr11:7830333 Cmo08g01213 Cmo-Chr8:7701057 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01246 K01051 - csv:101207393 963.37