Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01256 ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAATGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTTGGACGAAAAATTGCAATTGATGCCAGCATGAGTATCTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGTTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAGTTAAGCCAGTCTATGTGTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTTGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGCAGACCTGGCAGATGCAATTGAGGTTGGAAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTCAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCCGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGCAAGGATGCAATATTCTCTGATGAAATAA 546 43.77 MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKARMQYSLMK 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8010662 8012380 + CmoCh11G012560.1 Cmo11g01256 391875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01256 181 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 176 IPR006084 -
Cmo11g01256 181 Gene3D - 9 178 - -
Cmo11g01256 181 SMART xpgn3 1 108 IPR006085 GO:0004518
Cmo11g01256 181 PANTHER FLAP ENDONUCLEASE 1 1 176 - -
Cmo11g01256 181 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Cmo11g01256 181 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Cmo11g01256 181 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Cmo11g01256 181 Pfam XPG I-region 150 175 IPR006086 GO:0004518
Cmo11g01256 181 SUPERFAMILY PIN domain-like 2 173 IPR029060 -
Cmo11g01256 181 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Cmo11g01256 181 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Cmo11g01256 181 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Cmo11g01256 181 CDD PIN_FEN1 4 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01256 Cmo-Chr11:8010662 Cmo11g01703 Cmo-Chr11:12081858 1.71E-14 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01256 K04799 - csv:101204273 335.495