Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01277 ATGGCTGGTGGTAGTGATTTGTTGCCACTCTTGGCTATGGTGGTTGTCCAATTCCTGTATGCAGGCTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGGATGAATCCAATGGTTCTAGTTGCTTACAGGCAGATGTTTGGTACCATAGCCATAGCTCCTTGTGCTTATTGGTTTGAGAGAAAAGGGAGACCCAAGATTACAAAACCTATCCTGTTTCAGATTCTACTGTGTTCCTTAACTGGGGCAACAGGAAATCAAGTGTTTTACTATGTTGGGTTAAAATATTCATCCCCCACCATCGCATGTGCATTGACCAATGTCCTGCCTGCTGCCACTTTTCTCCTCGCTCTTCTTTTCAGACAAGAATCTGTGGGGATCAAGACAACCCCAGGTGCAGCCAAGGTGATTGGGACTGTTGTGTGCGTCGGAGGGGCAATGTTGCTGTCGTTCTACCATGGACAAACCATTGACCTGGGTGAATCTGGGATTCATTGGAAGTATGCCGAGATGATGAGGGGGGAAAGTTCCAGCAGCCAAGGCGGCAGCGCCATCTGGGGCTCTCTCTACTTGATCATAAGCTCTGTTGCTTGGGCGGCTTGGTTTGTAATCCAAGCAAGGGTTAACTCTCAGTTTCCAGCTCCCTACACGAGCACGGCTATCATGACTTTCATGGCAAGCATTCAATGCGGAGCAATCGCCGTTGGCATTGAGCACAACACAGCTGCAGCTTGGTCATTGAAAAGTCCAATCCGCCTTGTTGGTGCTCTCTATGCGGGAGTAGCGTGCTCAGGGGTTGCATTTTGCCTAACCTCCTGGAGTATCCAAAAGAAAGGTCCTCTCTATGCCTCAGTTTTCAGCCCCTTCTTGCTCATTATCGTGGCTATTTTCAGCTGGGCCTTCTTTCAAGAGAAGTTATACGTAGGAACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATATGCTGTCCTATGGGGAAAGACCAAAGAGGTGAAACTACAACAGGTTAATGAAATGGCGGCAGTAGCAGAGGCAAAGCTGGATGAGTGTAATACCAAAGATGACTTGGAAGAACAGTCGTATGTGGTTTCAAATGGAAATATTCTCCATAGGTAA 1119 47.01 MAGGSDLLPLLAMVVVQFLYAGLNITSKLAMEFGMNPMVLVAYRQMFGTIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATGNQVFYYVGLKYSSPTIACALTNVLPAATFLLALLFRQESVGIKTTPGAAKVIGTVVCVGGAMLLSFYHGQTIDLGESGIHWKYAEMMRGESSSSQGGSAIWGSLYLIISSVAWAAWFVIQARVNSQFPAPYTSTAIMTFMASIQCGAIAVGIEHNTAAAWSLKSPIRLVGALYAGVACSGVAFCLTSWSIQKKGPLYASVFSPFLLIIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQVNEMAAVAEAKLDECNTKDDLEEQSYVVSNGNILHR 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8407466 8409670 - CmoCh11G012770.1 Cmo11g01277 391896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01277 372 PANTHER WAT1-RELATED PROTEIN 5 340 - -
Cmo11g01277 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
Cmo11g01277 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 329 - -
Cmo11g01277 372 Coils Coil 334 354 - -
Cmo11g01277 372 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020|GO:0016021
Cmo11g01277 372 Pfam EamA-like transporter family 9 150 IPR000620 GO:0016020|GO:0016021
Cmo11g01277 372 PANTHER WAT1-RELATED PROTEIN 5 340 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00962 Cmo-Chr2:5904866 Cmo11g01277 Cmo-Chr11:8407466 3.37E-70 dispersed
Cmo04g02086 Cmo-Chr4:12589069 Cmo11g01277 Cmo-Chr11:8407466 1.10E-62 dispersed
Cmo05g01072 Cmo-Chr5:8634436 Cmo11g01277 Cmo-Chr11:8407466 2.66E-154 dispersed
Cmo11g01277 Cmo-Chr11:8407466 Cmo18g00829 Cmo-Chr18:9683649 5.44E-83 dispersed
Cmo15g01397 Cmo-Chr15:9508894 Cmo11g01277 Cmo-Chr11:8407466 1.05E-57 dispersed
Cmo11g01277 Cmo-Chr11:8407466 Cmo11g01280 Cmo-Chr11:8485082 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01277 - - csv:101215353 645.58