Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo11g01293 | ATGGATGTGATTCTCTCTAAACTGGAAGAGCTGAGGAATTCCGATTCCATGGAGGAGCGACCGTGTAAACGCCGAAAAATCGAATCGGAGAATCGAATGGCGGATTTTCATGGCGCCGAATCCACGGATTTGAGAACACGGTGGAGAACAGAGTCGGAGCAGTATATTTACTCTTCAAAACTAGTTCAGGCTCTCCATCGAATCAGCCAGAAATCCGCATCACCGCTGGCGAGATCTTCAATTAGCGGCCGGAAAGTACGCGATACGGCGGATCGAGTTCTCGCCGTTGCCGCTAAAGGCAAGACGCGGTGGAGCAGAGCGATCTTGTCAAATCGACTGGATCTCAAACTCAAGAAGCAAAAGAAGGTGAAACCGGCCGGAAACTGCAGGTGGACGAAGAAATTGGAAGTATCGAAGACGAGGAAATTGCCGGCGGTACAGCGAAAAGTTCGAACTCTCAGCCGCCTGGTTCCCGGCTGCCGGAAAATCTCATTCCCGAACCTCCTTGAAGAAGCTACAGATTACATCGCCGCTCTACAGATGCAGGTCCGCGCCATGACAGCCGTTGCCGAGATTCTCGGCGGTGCTCCGGCCGATCGTCAAAGCTTCAGAACGAATTCGTAG | 624 | 52.24 | MDVILSKLEELRNSDSMEERPCKRRKIESENRMADFHGAESTDLRTRWRTESEQYIYSSKLVQALHRISQKSASPLARSSISGRKVRDTADRVLAVAAKGKTRWSRAILSNRLDLKLKKQKKVKPAGNCRWTKKLEVSKTRKLPAVQRKVRTLSRLVPGCRKISFPNLLEEATDYIAALQMQVRAMTAVAEILGGAPADRQSFRTNS | 207 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 8782940 | 8783563 | + | CmoCh11G012930.1 | Cmo11g01293 | 391912 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo11g01293 | 207 | PANTHER | TRANSCRIPTION FACTOR BHLH149 | 16 | 202 | - | - | |
| Cmo11g01293 | 207 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 148 | 194 | IPR036638 | GO:0046983 | |
| Cmo11g01293 | 207 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 16 | 202 | IPR044660 | GO:0006355 | |
| Cmo11g01293 | 207 | CDD | bHLH_AtIBH1_like | 135 | 188 | IPR044549 | GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo05g01078 | Cmo-Chr5:8664597 | Cmo11g01293 | Cmo-Chr11:8782940 | 6.98E-61 | dispersed | |
| Cmo11g01293 | Cmo-Chr11:8782940 | Cmo17g00365 | Cmo-Chr17:2240071 | 1.02E-51 | dispersed | |
| Cmo11g01293 | Cmo-Chr11:8782940 | Cmo10g01242 | Cmo-Chr10:12527421 | 1.04E-99 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo11g01293 | - | - | cmo:103492109 | 260.766 |