Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01302 ATGAGTCAGACAGAAGTATCAAGGATTAAACCCCCTCTCGTTCCGCTTGCTACCTTGATTGGTCGCGAGCTGAGGAACGAGAGGGTTGAGAAACCTTTTGTGAAGTATGGACAGGCTGCTTTGGCAAAGAAAGGAGAGGACTACTTTCTGATTAAACTTGATTACCACCGTATTCCTGGAAACCCTTCTACTGCATTTTCTGTTTTTGCGATTTTTGATGGGCATAATGGCATATCAGCCGCTATCTTTGCAAAGGAACATTTACTGGGTAATGTTTTAAGTGCAATTCCTCAAGGGGCCAGTCGAGAAAAATGGCTACAAGCCCTTCCTCGAGCATTAGTTGCTGGTTTTGTCAAAACTGACATAGAGTTTCAGCAAAAAGGGGAAACTTCTGGAACTACTGTTACATTTGTTGTGATTGATGGGTGGACTGTTACAGTGGCGTCCGTGGGAGATTCACGGTGCATATTAGACACCCAAGGAGGTGTGGTTTCTCTATTGACGGTTGATCATAGGCTGGAGGAAAATGAGGAAGAGAGGAAACGTGTAACTGCGAGTGGTGGTGAGGTTGGGAGGCTCAATGTTTTCGGCGGCAATGAGGTCGGTCCTCTCCGCTGCTGGCCTGGTGGCTTATGTCTTTCTAGGTCCATTGGTGATACAGATGTAGGAGAATATATTGTCCCGATACCGCATGTTAAGCAAGTGAAGCTTTCTAATGCTGGCGGACGACTAATAATTGCTTCTGATGGTATATGGGATGCTTTATCGTCTGATATGGCTGCAAAGTCTTGTCGTGGTTTACCTGCAGAGCTTGCTGCTAAGCTAGTTGTGAAGGAGGCTCTGCGGTCGAGGGGGTTGAAGGACGATACAACTTGCTTAGTTGTTGATATCATACCATCCGAGCAACCTATATTATTACCACCAACTCCAAGGACGAAGCAAAATGTGCTCACCACACTCTTTGGGAAGAAATATCAAAACTCTTTGGGCAAATCTGCAAATAAACTTTCTGCTGTTGGAGTGGTGGAGGAATTGTTTGAAGAAGGTTCCGCTATGCTTGCTGAAAGGTTAGGCAAAGATTTAGCGTCAGATCCAAACTCAGGGATCTTCAAATGTGCAGTTTGTCAAGTGGATCAACCCCCAAATGAAAATTTGTCGATGAATTCGGGGCCTTTCTTTTCGCCATCGTCAAAGCCATGGGAAGGTCCGTTCCTCTGTGCAACATGTCGAAGAAAGAAAGACGCCATGGAAGGAAAAAGGGCGACAAAACCTACAATAACCGTCTAG 1287 45.45 MSQTEVSRIKPPLVPLATLIGRELRNERVEKPFVKYGQAALAKKGEDYFLIKLDYHRIPGNPSTAFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGASREKWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERKRVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSEQPILLPPTPRTKQNVLTTLFGKKYQNSLGKSANKLSAVGVVEELFEEGSAMLAERLGKDLASDPNSGIFKCAVCQVDQPPNENLSMNSGPFFSPSSKPWEGPFLCATCRRKKDAMEGKRATKPTITV 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8904360 8907696 + CmoCh11G013020.1 Cmo11g01302 391921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01302 428 SUPERFAMILY PP2C-like 43 297 IPR036457 -
Cmo11g01302 428 CDD PP2Cc 43 297 IPR001932 -
Cmo11g01302 428 Gene3D - 38 302 IPR036457 -
Cmo11g01302 428 Pfam Protein phosphatase 2C 63 280 IPR001932 -
Cmo11g01302 428 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 427 - -
Cmo11g01302 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 427 - -
Cmo11g01302 428 SMART PP2C_SIG_2 33 297 IPR001932 -
Cmo11g01302 428 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
Cmo11g01302 428 SMART PP2C_4 23 295 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g01229 Cmo11g01302 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00211 Cmo-Chr9:983713 Cmo11g01302 Cmo-Chr11:8904360 6.83E-173 dispersed
Cmo10g01229 Cmo-Chr10:12283438 Cmo11g01302 Cmo-Chr11:8904360 0 dispersed
Cmo11g01302 Cmo-Chr11:8904360 Cmo18g01015 Cmo-Chr18:10985698 7.79E-157 dispersed
Cmo11g01302 Cmo-Chr11:8904360 Cmo04g01566 Cmo-Chr4:8006180 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01302 - - csv:101219622 810.446