Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01303 ATGGCTTCTTTTGTCAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAGGATGCCTTGCAAGCTCTTCATGATCTTATAACTTCAAAGAAATATAGAGCATGGCAGAAACCTCTTGAAAGGATTATGTTTAAGTATGTTGAGCTTTGTGTGGACATGAGGAAAGGAAGGTTTGCAAAGGATGGTTTGATTCAGTACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCATTAGAAGAAGCTCTTGATGTTGATGACTTGGAAGCCGATAAAAGGCCAGAAGATCTGATGCTTAGTTATGTCAGTGGGGAGAAAGGAAAGGACAGATCTGACCGCGAACTTGTTACCCCTTGGTTTAAATTTCTATGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAAGCACTTTATGCGATGACAGCTCATCGTGCCTTCCAGTTTTGTAAGCTGTACAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAACCTCAACAAGTATAGAGACCAAAGAGATCGGCCTGACCTATCTGCTCCAGAGAGCTTGCAGTTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACGGAGCTTGAACTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGTATGGTGAAGAAAACACCCAAGCCATCGTTGATGGTGGTTTACTACGTCAAATTAACAGAGATCTTCTGGATATCGGATAGTAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGACCTACAGCTGATAGCATCATCTGTTGTGTTAGCAGCTCTTGCAGTGCCCCCCTATGACTCCAAGCATGGTGCATCACATTTAGAACTGGAACATGAGAAAGAGCGCAGTTTGAGGATGGCTAATCTCATAGGGTTCAGTTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCGAGGGAAAATCTTCTCTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGTGCAACTCAGGAAATTAAAGATCTTTATCATCTTTTGGAGCATGAGTTCTTCCCTCTCGATCTTGCATTAAAATTGCAACCGTTGTTCACAAAAATATCTAAGCTTGGAGGTAAGCTTTCATCAGCCTCATCTGTACCCGAATTGCAATTGTCTCAATATGTTCCAGCTCTTGAAAAACTTGCTACCCTGAGGCTACTTCAGCAGGTCTCCCATGTGTACCAGACTATGAAAATTGAGAGTCTGTCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATTAGTTGACGCAGTTAAACAAAATTTCATCGCCATGAAAGTCGATCATTCAAGGAACATTGTCTTATTTGGAAATTTGGGTATTGAATCAGAAGGGCTTCGGGACCACCTGACTGTGCTTGCTGAGTCCCTAAACAAAGTAAGAGCCATGATCTACCCTCCTGTAAAGAAAAGATCAAAAACAGGTGAAATATTGCCTGATTTAGCAGATATTGTTGATAAAGAGCACAAGAGGCTTCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGGCAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTAAAGATAACTGAAGAGGCTGAGCAGAAGCGTCTTGCTGCAGAATATGAACAAAGGAAAAGTCAACGGCTTCGTAGGGAAATGGAAGAGCGAGAACTTGAAGAAGCACAGGCATTACTCCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCGGTTCTTGATTCCGAAAAGTTGACTAAACAAACCTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAAAAGAAATTGCAGAAGCTTTCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCAGCAACGTTAATCGAAGCTGCATTTCAGCAACGTTTGCTTGAAGAGAGGATGATTCATGAACGTGATCAGCAGCTGGAGGTCGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTGAAGGAGAAGAATAGATTGGCAAGAATGTTGGAGAGCAAGAAAATTTTCCAAGAAAGAGTTCTCAGTCTTCGCCAAGAGGAGTTCAACAAACGTAGAGCTGAGAGAGAAGAACAGATCAGGCAAATAATTCAGTCTCGTAAAGCAGAAAGGGAGGCTAAGAGAAAGAAAATCTTTTATGTGAGGCGTGAAGAGGAGAGAATCAGAATATTGCGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAAGCCGAAAGGAGGAAAAGGGAGGAAGCTGAACGCAAGGCAAAATTGGATGAGATTGCTGAGAAACAGAGGCAGAGAGAGCGCGAATTGGAAGAAAAAGAAAGACTGCGGAAAGAAATGCTCTTTGGTGGAGGCAAATCAGGTGATGCTTCTGCTAGGCCCGATGTTTCTCCTGCTTCTCGACCTCAGGAGTCTAGGACTGCTCCTGCTGCTGCAGCTGCTGCGGCTGCAGCCCCGGCCGCAGGAAAATATGTGCCAAGGTTCCTACGTGAACGGACTGAGAGCTCCAGCCCTAATGCACCACCTCCTGAATCTGATCGATGGGGAAGCAGCAGGCCTGACAATCGACCATCTCAGCCAGGTAGCTGGCGCAATGATGATCGTAGACCTGCTGCATTTGGAAGTTCAAGGTCGTCGTGGTCGTCGTCTCGAGTTCCTTCTCGTGGTGGCTCGGAGCGCTGA 2919 43.82 MASFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKLYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALAVPPYDSKHGASHLELEHEKERSLRMANLIGFSLDSKLESRDVLSRENLLSELVSKGVLSCATQEIKDLYHLLEHEFFPLDLALKLQPLFTKISKLGGKLSSASSVPELQLSQYVPALEKLATLRLLQQVSHVYQTMKIESLSQMIPFFDFSAVEKILVDAVKQNFIAMKVDHSRNIVLFGNLGIESEGLRDHLTVLAESLNKVRAMIYPPVKKRSKTGEILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKSQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLSKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVLSLRQEEFNKRRAEREEQIRQIIQSRKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKREEAERKAKLDEIAEKQRQRERELEEKERLRKEMLFGGGKSGDASARPDVSPASRPQESRTAPAAAAAAAAAPAAGKYVPRFLRERTESSSPNAPPPESDRWGSSRPDNRPSQPGSWRNDDRRPAAFGSSRSSWSSSRVPSRGGSER 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8914011 8922363 - CmoCh11G013030.1 Cmo11g01303 391922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01303 972 Coils Coil 669 699 - -
Cmo11g01303 972 Gene3D - 269 343 - -
Cmo11g01303 972 Gene3D - 363 494 - -
Cmo11g01303 972 SMART PINT_4 441 532 IPR000717 -
Cmo11g01303 972 Coils Coil 799 858 - -
Cmo11g01303 972 Coils Coil 732 752 - -
Cmo11g01303 972 Gene3D UVR domain 217 268 - -
Cmo11g01303 972 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 959 IPR027512 GO:0005852
Cmo11g01303 972 MobiDBLite consensus disorder prediction 815 972 - -
Cmo11g01303 972 Coils Coil 561 600 - -
Cmo11g01303 972 MobiDBLite consensus disorder prediction 951 972 - -
Cmo11g01303 972 MobiDBLite consensus disorder prediction 815 861 - -
Cmo11g01303 972 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 914 IPR027512 GO:0005852
Cmo11g01303 972 Coils Coil 610 649 - -
Cmo11g01303 972 Coils Coil 93 120 - -
Cmo11g01303 972 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Cmo11g01303 972 Pfam PCI domain 373 509 IPR000717 -
Cmo11g01303 972 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cmo11g01303 972 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 914 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01231 Cmo-Chr10:12297068 Cmo11g01303 Cmo-Chr11:8914011 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01303 K03254 - csv:101209344 1500.72