Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01307 ATGACACCCGTTTGGAGCTATGTTCTGTCCAAGTGGCAAACGTTGTCCACTTCTGATCACGCCTCTGTGGTTTCCATTAACTTATTTGTAGCTCTTCTCTGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAACGAGTCGATCACTGCCCTCTTCATTGGTATGTTTACCGGAGTCATCATTTTACTGGTCAGTGGTGGGAAAAGTTCGCATTTATTGCTCTTCAGCGAAGACATATTCTTCATTTATCTTCTGCCACCTATCATATTCAATGCTGGGTTTCAGGTGAAAAAGAAGCAATTCTTTGTTAACTTCATTACAATTATGCTGTTTGGAGCAATTGGAGCTTTTCAGATCTTTCAGAGAATGGATGTTGGAACACTGGATATTGCCGATATTTTAGCAATTGGAGCTATATTTGCAGCTACAGATTCTGTATGCACATTGCAGATATTAAACCAGGATGAAACACCTCTACTTTACAGTCTAGTATTTGGGGAGGGTGTAGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATTCAGAGCTTAGACCTCAGTAAAGTTGATGCAAGAGTTGCTTTGCATTTTATCGGGAGCTTCTTTTATTTGTTTTCAACGAGCACTCTACTCGGAGTGTTTGTTGGGCTGCTGAGTGCTTATACAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTAATGATGCTCATGGCATACCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACACTATACATGGCATAATGTGACTGAGAGTTCAAGAGTTACCACTAAGCATGCTTTTGCTACCTTATCCTTCATTTCAGAGACGTTTATCTTCGTTTATGTTGGCATGGATGCCTTGGACATTGAGAAGTGGAGCTATGTTAGTGATAGTCCAGGGACATCTGTTGCTGTGAGTGCAATATTACTAGCTCTGGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCATTATCATTTTTATCCAACTTAGTTAAAAAATCGGCTTCCGAGAAAATTACCTTCAGGCAACAAGTTATAATCTGGTGGGCTGGTCTCATGAGAGGGGCTGTCTCTATTGCTCTTGCTTATCATCAGGTGTTTGGGATATTGACCAAGCCTCTTATAAATTGTTTGGTACCTCACCCCAAAGACACCACCAGCTCCAGCATGCTATCGGAACCAGCGGCTCCAAAATCATTCTCGGTACCGCTACTCGGAAGTGCACAGGATTCGGAGGTGGATCTTGATAGTCCCAATATTCCTCGTCCAAGCAGTATCCGTGCACTCCTTGCGACTCCTACGCATACTGTTCATCGCTACTGGCGAAAATTTGATGATGCCTTCATGCGTCCAATGTTCGGGGGGCGGGGTTTTGTCCCCTTTGTTCCAGGATCGCCAACAGAAAGGGCAGCAGACAAGGGTTGGTGGCGTATTCACGTGTTTGCCAGGAATGGCATGGCGCCCGCCGAGCAGGTTGGAATGTGTCGATACTCTCTTGCCTACTGTTTTTTGCCCTCTTGTTTTTGGTAG 1614 43.56 MTPVWSYVLSKWQTLSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALFIGMFTGVIILLVSGGKSSHLLLFSEDIFFIYLLPPIIFNAGFQVKKKQFFVNFITIMLFGAIGAFQIFQRMDVGTLDIADILAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSKVDARVALHFIGSFFYLFSTSTLLGVFVGLLSAYTIKKLYFGRHSTDREVALMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSYVSDSPGTSVAVSAILLALVMVGRAAFVFPLSFLSNLVKKSASEKITFRQQVIIWWAGLMRGAVSIALAYHQVFGILTKPLINCLVPHPKDTTSSSMLSEPAAPKSFSVPLLGSAQDSEVDLDSPNIPRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERAADKGWWRIHVFARNGMAPAEQVGMCRYSLAYCFLPSCFW 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8965531 8970782 + CmoCh11G013070.1 Cmo11g01307 391926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01307 537 PANTHER SODIUM/HYDROGEN EXCHANGER 7 393 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cmo11g01307 537 PANTHER SODIUM/HYDROGEN EXCHANGER 394 501 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cmo11g01307 537 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo11g01307 537 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo11g01307 537 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo11g01307 537 PANTHER SODIUM/HYDROGEN EXCHANGER 2 394 501 - -
Cmo11g01307 537 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 393 - -
Cmo11g01307 537 Pfam Sodium/hydrogen exchanger family 29 391 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo11g01307 537 Gene3D - 134 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01147 Cmo-Chr1:9406608 Cmo11g01307 Cmo-Chr11:8965531 0 dispersed
Cmo10g01169 Cmo-Chr10:10438999 Cmo11g01307 Cmo-Chr11:8965531 0 dispersed
Cmo11g01307 Cmo-Chr11:8965531 Cmo17g01105 Cmo-Chr17:9077906 0 dispersed
Cmo11g01307 Cmo-Chr11:8965531 Cmo08g01176 Cmo-Chr8:7482903 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01307 - - csv:101214934 845.499